Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20e24
         (647 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   1.9  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   1.9  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    23   3.4  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   3.4  
DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex det...    22   4.4  
DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex det...    22   4.4  
DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex det...    22   4.4  
DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex det...    22   4.4  
DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex det...    22   4.4  
DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex det...    22   4.4  
DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex det...    22   4.4  
DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex det...    22   4.4  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    22   4.4  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   7.8  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 419 PGLSFSAPPGYLRPTTRD 472
           PG+SF  P G  RP  R+
Sbjct: 468 PGMSFGEPLGLRRPQERE 485


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 94  HQWARVGK*LMGTSNLSLMA*Q 159
           ++W RVGK L G   L++ A Q
Sbjct: 553 YEWVRVGKYLSGELRLNMSAIQ 574


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -3

Query: 579 VRVVCKNCIH 550
           VR  C+NCIH
Sbjct: 31  VRAFCRNCIH 40


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -3

Query: 579 VRVVCKNCIH 550
           VR  C+NCIH
Sbjct: 479 VRAFCRNCIH 488


>DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +3

Query: 516 NYETKNILNGRSEYNFYKQHEHLLN 590
           NY   N  N  + YN YK+  + +N
Sbjct: 90  NYSNYNNYNNNNNYNNYKKLYYNIN 114


>DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +3

Query: 516 NYETKNILNGRSEYNFYKQHEHLLN 590
           NY   N  N  + YN YK+  + +N
Sbjct: 90  NYSNYNNYNNNNNYNNYKKLYYNIN 114


>DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +3

Query: 516 NYETKNILNGRSEYNFYKQHEHLLN 590
           NY   N  N  + YN YK+  + +N
Sbjct: 90  NYSNYNNYNNNNNYNNYKKLYYNIN 114


>DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +3

Query: 516 NYETKNILNGRSEYNFYKQHEHLLN 590
           NY   N  N  + YN YK+  + +N
Sbjct: 90  NYSNYNNYNNNNNYNNYKKLYYNIN 114


>DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +3

Query: 516 NYETKNILNGRSEYNFYKQHEHLLN 590
           NY   N  N  + YN YK+  + +N
Sbjct: 90  NYSNYNNYNNNNNYNNYKKLYYNIN 114


>DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +3

Query: 516 NYETKNILNGRSEYNFYKQHEHLLN 590
           NY   N  N  + YN YK+  + +N
Sbjct: 90  NYSNYNNYNNNNNYNNYKKLYYNIN 114


>DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +3

Query: 516 NYETKNILNGRSEYNFYKQHEHLLN 590
           NY   N  N  + YN YK+  + +N
Sbjct: 90  NYSNYNNYNNNNNYNNYKKLYYNIN 114


>DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +3

Query: 516 NYETKNILNGRSEYNFYKQHEHLLN 590
           NY   N  N  + YN YK+  + +N
Sbjct: 90  NYSNYNNYNNNNNYNNYKKLYYNIN 114


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +3

Query: 60  FSEKQLSQIVKSS 98
           FS+KQ++ +VKSS
Sbjct: 316 FSDKQIASVVKSS 328


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 6/19 (31%), Positives = 12/19 (63%)
 Frame = +2

Query: 437 APPGYLRPTTRDSHHYVHR 493
           +P GY++P + +    +HR
Sbjct: 323 SPYGYVKPISPEQEELIHR 341


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,454
Number of Sequences: 438
Number of extensions: 3206
Number of successful extensions: 16
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)