Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt20e19
(639 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ... 27 1.7
SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 27 2.3
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch... 27 3.0
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual 27 3.0
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote... 26 4.0
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 26 5.3
SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 5.3
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo... 25 7.0
SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch... 25 9.2
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz... 25 9.2
>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1502
Score = 27.5 bits (58), Expect = 1.7
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = +1
Query: 241 LKFDWEGVLTYGVLATVILTHCVTLFLTAIMLVGTLREKPHLMRPWL 381
L + W + L TV+LT C++LF TL LM WL
Sbjct: 675 LSYSWRSLKETSSLLTVLLTKCLSLF-DEEFTPFTLNYYGELMMTWL 720
>SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 312
Score = 27.1 bits (57), Expect = 2.3
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 526 VLVASYYDLLEKDREYGERLKSLNNQHWYN 615
VLV S L DR Y E +++ HWYN
Sbjct: 249 VLVQSDPGDLPWDRGYSENWRAVMGDHWYN 278
>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
3|||Manual
Length = 923
Score = 26.6 bits (56), Expect = 3.0
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +3
Query: 150 WLYIIGLNFNPVLRAGNSALLSRHRNSLTVAKVRLGRSF 266
W +G + P+LR N L R R S + LG+ F
Sbjct: 63 WRQHVGPDLYPLLRLSNLIFLDRERGSYGFKEFGLGKLF 101
>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 684
Score = 26.6 bits (56), Expect = 3.0
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = -1
Query: 477 EHRRVAHMTDHVSCGPKHEHENVDHDLHRHPHQPRTHQVRFFPQSADKH 331
+ +R A+ D SC P H V+ ++ R HQ H + + + ++H
Sbjct: 212 KRKRQAYELDSQSC-PWHRQYKVEREVSRIFHQDILHFIDYITPTPEEH 259
>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 678
Score = 26.2 bits (55), Expect = 4.0
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +3
Query: 210 LSRHRNSLTVAKVRLGRSFDVWRFGNCHFDTLRHAVPDSH 329
++ H NS V V+LGR DVW G + + P +H
Sbjct: 493 MNAHTNS-GVKLVKLGRPSDVWSLGCILYQMVYGRAPFAH 531
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1465
Score = 25.8 bits (54), Expect = 5.3
Identities = 10/34 (29%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Frame = +1
Query: 355 KPHLMRPWLVWM---SVQIMIYVLMFVFWTTTNM 447
+PH + W +WM S+ ++I ++V + T N+
Sbjct: 37 RPHFSQFWTIWMKFFSIALVIITQIYVGYKTKNI 70
>SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 525
Score = 25.8 bits (54), Expect = 5.3
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Frame = +1
Query: 313 LFLTAIMLVGT-----LREKPHLMRPWLVWMSVQI-MIYVLMFVFWTTT 441
+F+ ++ VG+ + E P L WL W+ V + ++++FVF T
Sbjct: 212 IFMCSVASVGSPMGTGVAENPKLTWRWLYWIDVIVGGFFIILFVFTPET 260
>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1826
Score = 25.4 bits (53), Expect = 7.0
Identities = 21/86 (24%), Positives = 38/86 (44%)
Frame = +1
Query: 292 ILTHCVTLFLTAIMLVGTLREKPHLMRPWLVWMSVQIMIYVLMFVFWTTTNMVSHMGDTS 471
IL+HC+ LT I+ + + + PH + L W+ I ++ T + + +
Sbjct: 1714 ILSHCILFSLTPILCIPFI-DIPHSV--LLFWLHPSRQIRPPIY-----TRKQNQLRRRT 1765
Query: 472 MLGYALEFLTLLIRFYMLVLVASYYD 549
Y+L F LL F +++V D
Sbjct: 1766 FYRYSLLFFALLCTFVAMIVVPLVLD 1791
>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 681
Score = 25.0 bits (52), Expect = 9.2
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = -2
Query: 116 LGMCSIEKGRLVYIVYKRIGTKFMKKYFVQSQTSQF 9
LG+ S+ K R VY++ +G+ +Y + + S +
Sbjct: 145 LGLSSVLKERFVYVLQLHVGSLLTTRYAMSWEQSVY 180
>SPBC354.05c |sre2||membrane-tethered transcription factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 793
Score = 25.0 bits (52), Expect = 9.2
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = -1
Query: 420 HENVDHDLHRHPHQPRTHQ 364
H++ D + HPH P HQ
Sbjct: 156 HDSTDLSITHHPHLPINHQ 174
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,567,634
Number of Sequences: 5004
Number of extensions: 52494
Number of successful extensions: 159
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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