Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20e18
         (635 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z34799-2|CAA84318.1|  692|Caenorhabditis elegans Hypothetical pr...    31   0.52 
Z82271-6|CAB05213.1| 1091|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z73102-19|CAA97421.1| 1091|Caenorhabditis elegans Hypothetical p...    30   1.6  
AC024826-8|AAF60795.2|  580|Caenorhabditis elegans Hypothetical ...    29   2.8  
Z71178-1|CAA94874.1|  297|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z70206-1|CAA94124.1|  407|Caenorhabditis elegans Hypothetical pr...    28   6.4  
U88167-2|AAB42225.3|  908|Caenorhabditis elegans Hypothetical pr...    27   8.5  

>Z34799-2|CAA84318.1|  692|Caenorhabditis elegans Hypothetical
           protein F34D10.4 protein.
          Length = 692

 Score = 31.5 bits (68), Expect = 0.52
 Identities = 17/46 (36%), Positives = 20/46 (43%)
 Frame = +1

Query: 385 HQHSSPGVQGSAGGWNGAAKRERALPVRTGLARRRSPTRVRGRFRR 522
           H +  P      GGWN  A    A      +   RSP+R RG FRR
Sbjct: 241 HGNPKPQNYQIGGGWNPYANPPSAKDAPATVRDNRSPSRPRGDFRR 286


>Z82271-6|CAB05213.1| 1091|Caenorhabditis elegans Hypothetical
           protein F54E12.2 protein.
          Length = 1091

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 17/60 (28%), Positives = 30/60 (50%)
 Frame = +1

Query: 298 RKIGRESHALSHSRRDSRALRLETRSDSRHQHSSPGVQGSAGGWNGAAKRERALPVRTGL 477
           +K+   +   S ++   R LR   + ++  + SSP    S GGW  +A  +++  V TGL
Sbjct: 126 KKLAESTDLRSKAQLRERLLRKSLKQNA--EDSSPTRAASGGGWGSSADVKKSPEVSTGL 183


>Z73102-19|CAA97421.1| 1091|Caenorhabditis elegans Hypothetical
           protein F54E12.2 protein.
          Length = 1091

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 17/60 (28%), Positives = 30/60 (50%)
 Frame = +1

Query: 298 RKIGRESHALSHSRRDSRALRLETRSDSRHQHSSPGVQGSAGGWNGAAKRERALPVRTGL 477
           +K+   +   S ++   R LR   + ++  + SSP    S GGW  +A  +++  V TGL
Sbjct: 126 KKLAESTDLRSKAQLRERLLRKSLKQNA--EDSSPTRAASGGGWGSSADVKKSPEVSTGL 183


>AC024826-8|AAF60795.2|  580|Caenorhabditis elegans Hypothetical
           protein Y55F3AM.3a protein.
          Length = 580

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
 Frame = +1

Query: 301 KIGRESHALSHSRRDSRALRLETRSDSRHQHSSPGVQGSAG--GWNGAAKRERALPVRTG 474
           ++ +   + S  R  +R+ R  +RS  R   S      S    G  G  +R R+      
Sbjct: 17  EMAKNDRSQSRQRSPARSNRSRSRSKDRKSSSRRSRSRSRDRRGDRGDRRRSRSRSKDRR 76

Query: 475 LARRRSPTRVRGRFR 519
             RRRSP+R R R R
Sbjct: 77  TTRRRSPSRERRRSR 91


>Z71178-1|CAA94874.1|  297|Caenorhabditis elegans Hypothetical
           protein B0024.1 protein.
          Length = 297

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 27/87 (31%), Positives = 33/87 (37%), Gaps = 2/87 (2%)
 Frame = +1

Query: 292 RPRKIGRESHALSHSRRDSRALRLETRSDSRHQHSSPGVQGSAG--GWNGAAKRERALPV 465
           RP + G + +A    R  +         D R  H SPG  G AG  G  GA       P 
Sbjct: 184 RPGQPGPQGNAGQPGRDGNPGQPGHPGKDGRRGHGSPGAPGRAGQPGRQGAPGN----PG 239

Query: 466 RTGLARRRSPTRVRGRFRRLGHIKSDG 546
           R G      P    GR  + G+  SDG
Sbjct: 240 RPGERGPSGPCGPAGRSGQPGNRGSDG 266


>Z70206-1|CAA94124.1|  407|Caenorhabditis elegans Hypothetical
           protein C49F8.1 protein.
          Length = 407

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +3

Query: 267 TSNRQEMSQTA*NWPRIARIKP*QT 341
           TSN+Q+ +QTA  +P    IKP QT
Sbjct: 230 TSNQQQYTQTAQQYPAQQEIKPSQT 254


>U88167-2|AAB42225.3|  908|Caenorhabditis elegans Hypothetical
           protein D2092.5 protein.
          Length = 908

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
 Frame = +1

Query: 328 SHSRRDSRALRLETRSDSRHQHSS--PGVQGSAGGWNGAAKRERALPVRTGLARRRSPTR 501
           S +  +S+  + ++   S HQHSS     Q S G  NG A+   A+   +      + T 
Sbjct: 463 SQNNNNSQKQQKQSNGKSHHQHSSHQNNHQKSNGNSNGHARGFAAVRDSSHDTNASNETD 522

Query: 502 VRGRFRRLGHIKSD 543
           +R   R L  ++S+
Sbjct: 523 IRSMSRELESLRSE 536


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,390,864
Number of Sequences: 27780
Number of extensions: 228059
Number of successful extensions: 616
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)