Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20e18
         (635 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    22   5.7  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   7.6  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   7.6  

>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +2

Query: 266 NLKQTGNESDRVKLAENRTH*AIADATHERS 358
           N+K++GNES +   + N       D  H  S
Sbjct: 199 NIKKSGNESKKYATSSNSLRNRTHDFQHTSS 229


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +1

Query: 451 RALPVRTGLARRRSPTRV 504
           R  P RTG   +R PT +
Sbjct: 164 RVDPFRTGFEHKRQPTSI 181


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +1

Query: 451 RALPVRTGLARRRSPTRV 504
           R  P RTG   +R PT +
Sbjct: 164 RVDPFRTGFEHKRQPTSI 181


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,349
Number of Sequences: 438
Number of extensions: 2640
Number of successful extensions: 16
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)