Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt20e17
(650 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo... 47 3e-06
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch... 37 0.002
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb... 34 0.015
SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p... 29 0.44
SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces ... 29 0.58
SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux transporte... 29 0.77
SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p... 28 1.3
SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces ... 27 1.8
SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces ... 27 2.3
SPAC24C9.03 |mvd1||diphosphomevalonate decarboxylase |Schizosacc... 27 2.3
SPBC36.03c |||spermidine family transporter |Schizosaccharomyces... 27 3.1
SPAC16E8.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 3.1
SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces ... 26 4.1
SPAPB24D3.01 ||SPAPB2C8.02|transcription factor |Schizosaccharom... 26 5.4
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo... 26 5.4
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos... 26 5.4
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa... 26 5.4
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc... 26 5.4
SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomy... 25 7.2
SPAC3F10.10c |map3||pheromone M-factor receptor |Schizosaccharom... 25 7.2
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 25 7.2
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch... 25 9.5
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar... 25 9.5
>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
Itr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 575
Score = 46.8 bits (106), Expect = 3e-06
Identities = 44/201 (21%), Positives = 90/201 (44%), Gaps = 16/201 (7%)
Frame = +3
Query: 96 VIALIASLGFFTHGIQTANLTS------TAHSGHFINTDHVPWSTTALVITAAIAGPVFC 257
V+A A +G G T ++ T+ GH + + T+A + A + G +
Sbjct: 89 VLAFAAGIGGLLFGYDTGVISGALVVIGTSLGGHELTNGGKEFITSATSLGALLGGIIAG 148
Query: 258 FTIDRHGRKMGIFIIN-LVQGASLIPLFFLNDTSTIILHVIAGMATGGLFTVCPIYIQEI 434
D GRK I I + ++ S++ + + I+ + G G + P+Y+ EI
Sbjct: 149 ALADFFGRKPVIAIASIIIIVGSIVQVTAHHLWHMIVGRFVIGWGVGIASLIIPLYLSEI 208
Query: 435 SSLKTKGFSMCVTMVMTAAGYMMRLVM-----NLEERMFFMVALVM----FQFILMVFVL 587
+ K +G + + +++ AG ++ + ++ +MV L M FQ +++++
Sbjct: 209 APSKIRGRLVIIYVLLITAGQVIAYGIDTAFEHVHNGWRWMVGLAMVPAAFQLFILIWLP 268
Query: 588 ESPSYLMMKRKFETASTLIAK 650
ESP L+ K + + A +A+
Sbjct: 269 ESPRLLVKKERSQEAYNTLAR 289
>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 37.1 bits (82), Expect = 0.002
Identities = 33/118 (27%), Positives = 47/118 (39%), Gaps = 5/118 (4%)
Frame = +3
Query: 156 TSTAHSGHFINTDHVPWSTTALVITAAIAGPVFCFTIDRHGRKMGIFIINLVQGASLIPL 335
T T F V W+ TA +I+ P+F D +GRK + V G
Sbjct: 112 TYTKIGAEFGKFSQVSWTATAYMISCTAFQPLFGKFCDIYGRKKTLLAAYCVFGIGC--- 168
Query: 336 FFLNDTS-----TIILHVIAGMATGGLFTVCPIYIQEISSLKTKGFSMCVTMVMTAAG 494
FL TS + IAG+ GG+ + I + +I LK +G + V A G
Sbjct: 169 -FLCGTSRSLWQLVAARAIAGIGGGGMNSTVSILMSDIVPLKQRGTYQGIINVFFAIG 225
>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 420
Score = 34.3 bits (75), Expect = 0.015
Identities = 13/50 (26%), Positives = 20/50 (40%)
Frame = -1
Query: 611 HHQITRRLQYEDHQNKLEHHQCHHKEHPLFEIHHQSHHVSCCGHHHRYAH 462
H L+ HH H + ++HH+ HH HHH ++H
Sbjct: 266 HESSNSNLKKSSESGSTNHHNNHESDK---DLHHEGHHHHHHHHHHHHSH 312
>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 555
Score = 29.5 bits (63), Expect = 0.44
Identities = 27/126 (21%), Positives = 56/126 (44%), Gaps = 11/126 (8%)
Frame = +3
Query: 288 GIFIINLVQGASLIPLFFLNDTSTIILHVIAGMATGGLFTVCPIYIQEISSLKTKGFSMC 467
G++II + + +P + ++ ++AG+ G L + P Y E++ + +G +
Sbjct: 94 GVYIIAELLLVTAVPSWI----QVLVGKILAGVGIGALSVLSPGYQSEVAPPQIRGAVVA 149
Query: 468 VTMVMTAAGYMMRLVMNLEERMFFMVAL--------VMFQFILMVFVL---ESPSYLMMK 614
+ + ++ +N+ A +++ +LMV VL ESP YL+ K
Sbjct: 150 TYQIFSTGAALVAACINMGTHKLRKTASWRTSFGINMLWGILLMVGVLFLPESPRYLIYK 209
Query: 615 RKFETA 632
+ E A
Sbjct: 210 GRDEEA 215
>SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 547
Score = 29.1 bits (62), Expect = 0.58
Identities = 33/160 (20%), Positives = 67/160 (41%), Gaps = 14/160 (8%)
Frame = +3
Query: 213 TALVITAAIAGPVFCFTI-DRHGRKMGIFIINLVQ--GASLIPLFFLNDTSTIILHVIAG 383
T +V ++ G + + DR G+++ I +V G L + ++ + G
Sbjct: 62 TGMVNVGSMTGCILSSPLMDRIGKRVSIMFWTIVYLIGIILQVTAVPSWVQIMVAKIWTG 121
Query: 384 MATGGLFTVCPIYIQEISSLKTKGFSMCVTMVMTAAGYMMRLVMNL---------EERMF 536
+A G L + P + E++ +G + + G + +N+ + R+
Sbjct: 122 LAIGALSVLAPGFQSEVAPATLRGTIVTTYQLAVTGGIFIAACINMGTHKLHKTAQWRVS 181
Query: 537 FMVALV--MFQFILMVFVLESPSYLMMKRKFETASTLIAK 650
+ L+ + FI + F+ ESP YL+ K E A ++ K
Sbjct: 182 MGINLLWGIIMFIGISFLPESPRYLIAIGKDEEALDIMCK 221
>SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 531
Score = 28.7 bits (61), Expect = 0.77
Identities = 24/105 (22%), Positives = 47/105 (44%), Gaps = 4/105 (3%)
Frame = +3
Query: 192 DHVPWSTTALVITAAIAGPVFCFTIDRHGRKMGIFIINLVQGASLIPLFFLNDTSTI--- 362
++ + TA +IT P++ D GR+ + N A + F+ + ++
Sbjct: 66 NNASYIVTAYLITNTAFQPLYGRLSDIFGRRPTVVFAN---AAFTLGTFWCGISRSLPEL 122
Query: 363 -ILHVIAGMATGGLFTVCPIYIQEISSLKTKGFSMCVTMVMTAAG 494
+ +AG+ GGL T+ I +I SL+ +G +T ++ G
Sbjct: 123 CMARALAGIGGGGLGTMSSIISSDIVSLRERGTWQGITNIVWGIG 167
>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 531
Score = 27.9 bits (59), Expect = 1.3
Identities = 32/164 (19%), Positives = 67/164 (40%), Gaps = 18/164 (10%)
Frame = +3
Query: 213 TALVITAAIAGPVFCFTI-DRHGRKMGI------FIINLVQGASLIPLFFLNDTSTIILH 371
T +V ++ G + I DR G+++ I +II ++ + +P + ++
Sbjct: 66 TGMVNVGSLFGCIISSPIADRFGKRLSIIGFCAVYIIGIIVQVTAVPSW----VQIMVAK 121
Query: 372 VIAGMATGGLFTVCPIYIQEISSLKTKGFSMCVTMVMTAAGYMMRLVMNLEERMFFMVAL 551
+ G+ G L + P Y E + +G + + G + +N+ A
Sbjct: 122 IWTGIGIGALSVLAPGYQSETAPPSIRGTVVVTYQLFVTGGIFIAACINMGTHKLHKTAQ 181
Query: 552 --------VMFQFILMVFVL---ESPSYLMMKRKFETASTLIAK 650
+++ I M+ +L ESP YL+ K E A ++++
Sbjct: 182 WRVSIGINLLWGIITMIGILFLPESPRYLIQVGKDEEAVRVLSE 225
>SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 546
Score = 27.5 bits (58), Expect = 1.8
Identities = 24/131 (18%), Positives = 58/131 (44%), Gaps = 11/131 (8%)
Frame = +3
Query: 291 IFIINLVQGASLIPLFFLNDTSTIILHVIAGMATGGLFTVCPIYIQEISSLKTKGFSMCV 470
+++I ++ + +P + ++ + G++ G L + P + E++ +G +
Sbjct: 95 VYLIGIILQVTAVPSW----VQIMVAKIWTGLSIGALSVLAPGFQSEVAPADLRGTIVTT 150
Query: 471 TMVMTAAGYMMRLVMNL---------EERMFFMVALV--MFQFILMVFVLESPSYLMMKR 617
+ G + +N+ + R+ + L+ + FI + F+ ESP YL+
Sbjct: 151 YQLAVTGGIFIAACINMGTHKLHKTAQWRVSMGINLLWGIITFIGISFLPESPRYLISVG 210
Query: 618 KFETASTLIAK 650
+ E A ++AK
Sbjct: 211 RDEEALQIMAK 221
>SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 557
Score = 27.1 bits (57), Expect = 2.3
Identities = 27/132 (20%), Positives = 55/132 (41%), Gaps = 11/132 (8%)
Frame = +3
Query: 288 GIFIINLVQGASLIPLFFLNDTSTIILHVIAGMATGGLFTVCPIYIQEISSLKTKGFSMC 467
G +II + + +P + ++ + G+ G L + P Y E++ + +G +
Sbjct: 94 GCYIIGQILLVTAVPSW----VQIMVGKLFTGLTIGALSVLSPGYQSEVAPPQIRGAVVS 149
Query: 468 VTMVMTAAGYMMRLVMNLEERMFFMVAL--------VMFQFILMVFVL---ESPSYLMMK 614
+ G ++ +N+ A +++ LMV VL ESP YL+ K
Sbjct: 150 TYQLFQTCGTLIAACINMGTHKLRKTASWRTSFGINILWGIFLMVGVLFLPESPRYLIYK 209
Query: 615 RKFETASTLIAK 650
+ E A ++ +
Sbjct: 210 GRDEEALRIMCQ 221
>SPAC24C9.03 |mvd1||diphosphomevalonate decarboxylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 393
Score = 27.1 bits (57), Expect = 2.3
Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = +3
Query: 330 PLFFLNDTSTIILHVIAGM-ATGG 398
P+F+LNDTS ++ V+ + AT G
Sbjct: 273 PIFYLNDTSRAVIRVVENINATAG 296
>SPBC36.03c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 538
Score = 26.6 bits (56), Expect = 3.1
Identities = 19/95 (20%), Positives = 40/95 (42%), Gaps = 2/95 (2%)
Frame = +3
Query: 216 ALVITAAIAGPVFCFTIDRH-GRKMGIFIINLVQGASLIPLFFLNDTSTIIL-HVIAGMA 389
+L + +GP+ I GRK+ + + + I + D T+++ +G
Sbjct: 140 SLYVCGFASGPILWAPISELVGRKIPLIVGMFMFSIFSIAVAVAKDVQTVMICRFFSGFC 199
Query: 390 TGGLFTVCPIYIQEISSLKTKGFSMCVTMVMTAAG 494
+V ++ KT+G ++C+ +T AG
Sbjct: 200 ASSPLSVVAAAFADMFDNKTRGPAVCIFACITFAG 234
>SPAC16E8.12c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 170
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +2
Query: 398 LIHRMPNIHPRNIIAKNKRLLNVRNDGDDRSRIHDAIGDES 520
L++R ++ RN++A+N LL +D R + H A+ E+
Sbjct: 14 LLNRDTSVERRNLVARNLSLLLKSDDVQTRKKSHIAMYAEA 54
>SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 318
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/43 (25%), Positives = 22/43 (51%)
Frame = +2
Query: 380 RHGHWRLIHRMPNIHPRNIIAKNKRLLNVRNDGDDRSRIHDAI 508
R H +L++ + N+ N + RLL++ + + +HD I
Sbjct: 125 RESHLKLLNELQNVKDTNDLKDRIRLLHLNSSSKLNAFLHDLI 167
>SPAPB24D3.01 ||SPAPB2C8.02|transcription factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 594
Score = 25.8 bits (54), Expect = 5.4
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +2
Query: 341 SKRYKHNHSTRNRRHGHWRLIHRMPNIHPRNIIAKNKRLLN 463
SKR K ++S +++G+ L +P++ P I +LN
Sbjct: 41 SKRLKRSYSATKKKNGNPVLESAIPSLSPSPSIENGSAMLN 81
>SPAC630.05 |gyp7||GTPase activating protein Gyp7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 743
Score = 25.8 bits (54), Expect = 5.4
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +3
Query: 258 FTIDRHGRKMGIFIINL-VQGASLIPLFFLND 350
F R+G G +INL G SL PLFF +D
Sbjct: 129 FRPPRYGWNYGSIVINLRDSGESLPPLFFHDD 160
>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 731
Score = 25.8 bits (54), Expect = 5.4
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -2
Query: 139 MPCVKNPKLAMRAMTTPRHTLPRSTSLVITTRS 41
+P + + A RAMT+PR LPR + +RS
Sbjct: 503 VPSTPSVRSASRAMTSPRTPLPRVKNTQNPSRS 535
>SPCC550.03c |||RNA helicase involved in mRNA
catabolism|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1213
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +3
Query: 42 DRVVITKDVERGSVWRGVVIAL 107
D V D+ERG VW V+I L
Sbjct: 393 DEVHYVNDLERGVVWEEVIIML 414
>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 609
Score = 25.8 bits (54), Expect = 5.4
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +2
Query: 275 WKENGNFYY*SGSRCFLNTLVLSKRYKHNHSTRNRRHGHWRLIHRMPNI 421
W + G+ + G F LVL + +KHN+ + R + H++P+I
Sbjct: 72 WSDRGDSFLVIGHEDFAK-LVLPRYFKHNNFSSFVRQLNMYGFHKVPHI 119
>SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 25.4 bits (53), Expect = 7.2
Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
Frame = +3
Query: 3 SDSRLVMVYTVNCDRVVITKDVE----RGSVWRGVVIALIA-----SLGFFTHGIQTANL 155
S S L Y D +I K+V+ +++RG+ LI S+ FF++G L
Sbjct: 92 SKSPLTAAYRHFMDTCIILKNVKVHEGTRALFRGLGPNLIGTIPARSINFFSYGNGKRIL 151
Query: 156 TSTAHSGHFINTDHVPWSTTALVITAAIAGPVF 254
++G + H+ + A VIT+A P++
Sbjct: 152 ADLFNNGQENSQIHLMAAAIAGVITSAATNPIW 184
>SPAC3F10.10c |map3||pheromone M-factor receptor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 365
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = -1
Query: 260 ETKHWTGYGCCDH*SSCTPRYVVC 189
ET W GYG CD T R V C
Sbjct: 61 ETIRWMGYGLCD----ITSRIVTC 80
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 9 SRLVMVYTVNCDRVVITKDVERGSVW 86
SR +++ V R TKDVE+ +W
Sbjct: 451 SRFEILFPVKLQREDFTKDVEKSDLW 476
>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 632
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -1
Query: 542 HKEHPLFEIHHQSHHVSCCGHHHRYA 465
H+E LFE H+S+ C H YA
Sbjct: 193 HRESFLFEYFHRSNDNMYCSEHLIYA 218
>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1689
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = +2
Query: 371 RNRRHGHWRLIHRMPNIHPRNIIAKNKRLLNVRNDGDDRSRIHDA 505
R+ R+G +++R P +H +++A R+L G+ R+H A
Sbjct: 595 RHVRNGDMLILNRQPTLHKPSMMAHKARIL----PGEKTIRMHYA 635
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,741,051
Number of Sequences: 5004
Number of extensions: 58738
Number of successful extensions: 188
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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