Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20e17
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      25   0.84 
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   5.9  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   5.9  
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    21   7.8  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    21   7.8  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    21   7.8  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   7.8  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    21   7.8  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   7.8  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -1

Query: 542 HKEHPLFEIHHQSHH 498
           H++ P+++ HH  HH
Sbjct: 64  HRDLPIYQSHHHLHH 78


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 408 VCPIYIQEISSLKTK 452
           +CPIYI+  S  K K
Sbjct: 129 ICPIYIESFSYHKQK 143


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 12/43 (27%), Positives = 15/43 (34%)
 Frame = -1

Query: 575 HQNKLEHHQCHHKEHPLFEIHHQSHHVSCCGHHHRYAH*EAFC 447
           HQ +L       K +     H  +HHV    HH    H    C
Sbjct: 256 HQKELVRRDSRRKNYGGV-YHLDNHHVHHANHHAILGHSGFLC 297


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 491 RIHDAIGDESRREDVLYGG 547
           +I D IGD    E ++Y G
Sbjct: 15  QIRDRIGDNELEERIIYPG 33


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 491 RIHDAIGDESRREDVLYGG 547
           +I D IGD    E ++Y G
Sbjct: 20  QIRDRIGDNELEERIIYPG 38


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +1

Query: 364 FYT*SPAWPLEAYSPYAQYTSKKYHR*KQKAS 459
           +Y  +P +PL        +T   YHR   K S
Sbjct: 54  YYIYNPRYPLPYSGSKCTWTITSYHRINLKCS 85


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 296 YY*SGSRCFLNTLVLSKR 349
           Y  +GS+CF+N  +L  R
Sbjct: 668 YAIAGSQCFINIWLLGSR 685


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 491 RIHDAIGDESRREDVLYGG 547
           +I D IGD    E ++Y G
Sbjct: 20  QIRDRIGDNELEERIIYPG 38


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = +2

Query: 350 YKHNHSTRNRRHGHWR 397
           + H+H T++ +H H+R
Sbjct: 352 HHHHHQTQSLQHLHYR 367


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,674
Number of Sequences: 438
Number of extensions: 4390
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)