Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20e15
         (690 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.09c |ufd1||Cdc48-Ufd1-Npl4 complex component Ufd1 |Schi...    27   2.6  
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa...    27   3.4  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    26   5.9  

>SPBC16A3.09c |ufd1||Cdc48-Ufd1-Npl4 complex component Ufd1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 342

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +2

Query: 236 YSKSFFTRDETGIR*LYGIRPCFHYPAGCRFTIRY 340
           +  SFF+ D+ G   +  +R  FH     RF  RY
Sbjct: 2   FGGSFFSSDDDGFSMMSQLRSAFHNNVNQRFDTRY 36


>SPCC576.15c |ksg1||serine/threonine protein kinase
           Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 592

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 8/51 (15%)
 Frame = -1

Query: 282 SYRIP------VSSLVKKLLLYDPKSSFSHSD--QSPYRHGFRSPVILTWE 154
           SY IP       S L+KKLL+ DPK   +  +  Q P+ +G +    L WE
Sbjct: 328 SYEIPPDISDVASDLIKKLLVLDPKDRLTVDEIHQHPFFNGIKFDNTL-WE 377


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = -1

Query: 276  RIPVSSLVKKLLLYDPKSSFSHSDQS 199
            ++P ++ V K+++Y P   F+H+D S
Sbjct: 2076 KLPGTNYVSKVMIYPPYVIFNHTDLS 2101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,922,214
Number of Sequences: 5004
Number of extensions: 62430
Number of successful extensions: 142
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)