Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20e15
         (690 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0018 + 3016137-3016186,3016529-3016776,3018717-3018811,302...    29   2.6  
02_05_0223 - 26943210-26944623,26944741-26945666                       29   4.6  
01_01_0583 - 4321992-4322165,4322261-4322353,4322445-4322828,432...    28   6.1  
06_01_1151 - 9727051-9729510,9733966-9734022,9735299-9735676           28   8.0  

>09_02_0018 +
           3016137-3016186,3016529-3016776,3018717-3018811,
           3020025-3020330,3021288-3021336,3021436-3021637,
           3023364-3023532,3023605-3023634,3023742-3023807,
           3025313-3025378,3029404-3029464,3029592-3029719,
           3030716-3030757,3031074-3031190,3031280-3031339
          Length = 562

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +1

Query: 67  GGRSVQGMRLHAPREAFQGSSAEW 138
           GGRSV+ + L  P+EA  GSS  W
Sbjct: 157 GGRSVRVIPLRHPQEAVAGSSPSW 180


>02_05_0223 - 26943210-26944623,26944741-26945666
          Length = 779

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -3

Query: 625 MCIIYVKSRDEKDSGLAEYLALSEIFVRVRVLSHVSGDR 509
           +C + VK  + +D   A+   + E+FVR R+L  V   R
Sbjct: 207 LCYVRVKFTEVRDIVFADKARVGEVFVRSRILGQVHRTR 245


>01_01_0583 -
           4321992-4322165,4322261-4322353,4322445-4322828,
           4322909-4322993,4323206-4323444,4323542-4323747,
           4324052-4324163
          Length = 430

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = -3

Query: 205 SKPLQARIQIPCHINVGA*GLLAIRHCYPEKLPLGHADAYLELTY-PLKFISSVQRH 38
           SK + AR   PCH    A  L  I   + + L   + + YLELT  P K ISSV +H
Sbjct: 75  SKNVSARP--PCHSGKIALQLFPIDEEFQKSLQQKNHNPYLELTVAPRKKISSVLQH 129


>06_01_1151 - 9727051-9729510,9733966-9734022,9735299-9735676
          Length = 964

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 7/57 (12%)
 Frame = -2

Query: 155 SIGSSGHSALLP*KA-----SLGACRRIP*TDLPPEVY--QFCSEALLSANI*RRHR 6
           ++GS+G   L+  ++     +LGA RRIP ++L   V+   F   AL  ANI  R R
Sbjct: 350 NVGSAGSKILVTSRSKDALVALGAVRRIPISELNDSVFLELFMHSALSGANIDERDR 406


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,361,190
Number of Sequences: 37544
Number of extensions: 382899
Number of successful extensions: 755
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)