Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20e15
         (690 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U02619-1|AAA17985.1| 2109|Homo sapiens TFIIIC Box B-binding subu...    31   2.9  
BC044857-1|AAH44857.1|  978|Homo sapiens GTF3C1 protein protein.       31   2.9  
AC002303-1|AAB67637.1| 1857|Homo sapiens Transcription factor (T...    31   2.9  

>U02619-1|AAA17985.1| 2109|Homo sapiens TFIIIC Box B-binding subunit
            protein.
          Length = 2109

 Score = 31.5 bits (68), Expect = 2.9
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = -3

Query: 562  LSEIFVRVRVLSHVSGDRDDSVRQQFDIHSTTICHLLILIN 440
            L E+F R RVL+   GD  D  R++ +++S    H L+L N
Sbjct: 1393 LQELFARYRVLA--IGDEKDQTRKEDELNSVDDIHFLVLQN 1431


>BC044857-1|AAH44857.1|  978|Homo sapiens GTF3C1 protein protein.
          Length = 978

 Score = 31.5 bits (68), Expect = 2.9
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = -3

Query: 562 LSEIFVRVRVLSHVSGDRDDSVRQQFDIHSTTICHLLILIN 440
           L E+F R RVL+   GD  D  R++ +++S    H L+L N
Sbjct: 287 LQELFARYRVLA--IGDEKDQTRKEDELNSVDDIHFLVLQN 325


>AC002303-1|AAB67637.1| 1857|Homo sapiens Transcription factor
            (TFIIIC) alpha chain, partial protein.
          Length = 1857

 Score = 31.5 bits (68), Expect = 2.9
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = -3

Query: 562  LSEIFVRVRVLSHVSGDRDDSVRQQFDIHSTTICHLLILIN 440
            L E+F R RVL+   GD  D  R++ +++S    H L+L N
Sbjct: 1141 LQELFARYRVLA--IGDEKDQTRKEDELNSVDDIHFLVLQN 1179


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,511,379
Number of Sequences: 237096
Number of extensions: 2055547
Number of successful extensions: 3433
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3431
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7895240574
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)