Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20e15
         (690 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            23   3.6  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   4.8  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   8.4  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   8.4  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   8.4  

>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/18 (50%), Positives = 16/18 (88%)
 Frame = -3

Query: 553 IFVRVRVLSHVSGDRDDS 500
           I+V V +++H+SGDR+D+
Sbjct: 111 IYVDV-IMNHMSGDRNDA 127


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 575 GQTTILFISTLYIDNTHKLVIDKQSQALD 661
           G TT+L +ST+ +D+   L   + + ALD
Sbjct: 280 GITTVLTLSTISLDSRTDLPKVRYATALD 308


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = -2

Query: 317 RPDSENMAGYRIVTVYPFHL**RSFYCMTRNLHLATAIKALTGTDS 180
           RPD++ M    I  +YP +    S     +NL ++     +TG ++
Sbjct: 151 RPDTKYMKFPAIYEIYPNYFFDSSVIEEAQNLKMSRGSSVVTGMNN 196


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = -2

Query: 317 RPDSENMAGYRIVTVYPFHL**RSFYCMTRNLHLATAIKALTGTDS 180
           RPD++ M    I  +YP +    S     +NL ++     +TG ++
Sbjct: 151 RPDTKYMKFPAIYEIYPNYFFDSSVIEEAQNLKMSRGSSVVTGMNN 196


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -1

Query: 138 PFGTATLKSFPWGMQTHTLN*PTP*SLSVLFR 43
           PF    ++SFP G    T   PTP ++  L R
Sbjct: 141 PFHEKLVESFPRGGSLPTPVTPTPTTVQQLLR 172


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,537
Number of Sequences: 438
Number of extensions: 4279
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)