Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt20e14
(460 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 1.0
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 1.0
SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr 3|||M... 27 1.4
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb... 26 2.4
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha... 26 2.4
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth... 25 5.6
SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|... 25 7.3
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces... 24 9.7
SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein S10|S... 24 9.7
>SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 312
Score = 27.5 bits (58), Expect = 1.0
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = -3
Query: 395 KSAFSELEPFSGSDFDFLTEGTTPSSAVLEPGPFSCRSPFTSQL 264
KS S + SG+D F + ++ ++++L GP SP S L
Sbjct: 129 KSVSSYVSNSSGADRSFSSNSSSDTNSILYAGPTFTHSPAASNL 172
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 27.5 bits (58), Expect = 1.0
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +2
Query: 8 LRECLQHRLLVLSSPHLTRTVHSHLKWRNAH 100
LR L+H LL S L + + S LKWRN H
Sbjct: 365 LRCALRHELL---SAGLQKAIDSLLKWRNRH 392
>SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 609
Score = 27.1 bits (57), Expect = 1.4
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +3
Query: 84 SGGTLTNNKEEAHQIVTGKLYAVGSATPPSERRLSVPA-TTIQS 212
+GGT+TN E Q +T L A S T P + +P +TI S
Sbjct: 324 TGGTVTNTVYEGSQTITSTL-ATASGTVPGTVEVILPGPSTIYS 366
Score = 24.6 bits (51), Expect = 7.3
Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 2/74 (2%)
Frame = -3
Query: 413 SSIARSKSAFSELEPFSGSDFDFLTEGTTPSSAVLEPGPFSCRSPFTSQL*GFLG--PGS 240
+++ AF+ P SGS E P+ + + TS L G PG+
Sbjct: 295 TTLQSGSQAFTTTVPASGS-VSGTVEVVQPTGGTVTNTVYEGSQTITSTLATASGTVPGT 353
Query: 239 VSTILCGRAALYGG 198
V IL G + +Y G
Sbjct: 354 VEVILPGPSTIYSG 367
>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
membrane proteins, ESCRT 0 complex|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 610
Score = 26.2 bits (55), Expect = 2.4
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +1
Query: 268 CDVKGDLQLNGPGSKTAELGVVPSVKKSKSDPEKG-SNSEKADFERAIELT 417
CD L+ GSK+ K++ P K +N+E D +RAIEL+
Sbjct: 222 CDSCYSLRTKPKGSKSRARNERKFHAKTRKTPSKPVTNNEDEDIKRAIELS 272
>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 720
Score = 26.2 bits (55), Expect = 2.4
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = -1
Query: 277 LHHNCEDSWAPGQFLPSYAGGRLCMVVAGTLKRLSLGGVALPTAYSLPV 131
LH + ED+ + G FL S A R+C + + + + L + + P+
Sbjct: 125 LHASLEDASSVGLFLLSLASERVCFSESANSQEIESIDLGLGSQFGYPI 173
>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1323
Score = 25.0 bits (52), Expect = 5.6
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 254 LGPGSVSTILCGRAALYGGRGDTQTSLTGGSGA 156
+ PGS +L G A L G G +S+ G G+
Sbjct: 436 IAPGSPIIVLGGPALLVGLGGGAASSMNAGEGS 468
>SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 552
Score = 24.6 bits (51), Expect = 7.3
Identities = 10/38 (26%), Positives = 20/38 (52%)
Frame = -1
Query: 238 FLPSYAGGRLCMVVAGTLKRLSLGGVALPTAYSLPVTI 125
++PS AGG C+ ++ K L + + + + +P I
Sbjct: 388 YIPSIAGGIACVAMSWDHKIGELAAIIIASNFGIPFII 425
>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 857
Score = 24.2 bits (50), Expect = 9.7
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +3
Query: 99 TNNKEEAHQIVTGKLYAVGSATPPS 173
TNNK+++ + + + S+TPPS
Sbjct: 144 TNNKDDSSAVKSANVSFPSSSTPPS 168
>SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein
S10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 147
Score = 24.2 bits (50), Expect = 9.7
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -1
Query: 262 EDSWAPGQFLPSYAGG 215
+D APG F PS+ GG
Sbjct: 125 DDGAAPGGFAPSFRGG 140
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.131 0.390
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,995,009
Number of Sequences: 5004
Number of extensions: 41851
Number of successful extensions: 111
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
- SilkBase 1999-2023 -