Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20e14
         (460 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0172 - 1928648-1930751,1932019-1932243,1933709-1934676           29   2.4  
09_01_0042 + 764349-764763,764853-764902,765096-765172,766179-76...    28   3.1  
08_01_0756 - 7161089-7161452,7161589-7161995                           27   9.6  
01_05_0220 - 19434011-19434802                                         27   9.6  

>10_01_0172 - 1928648-1930751,1932019-1932243,1933709-1934676
          Length = 1098

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 96  LTNNKEEAHQIVTGKLYAVGS-ATPPSERRLSVPATTIQSR 215
           LT+NKE +  IVT +  AVGS    P  + L  P + +  R
Sbjct: 421 LTDNKERSRIIVTSRFQAVGSTCCRPENKDLLYPISFLSPR 461


>09_01_0042 +
           764349-764763,764853-764902,765096-765172,766179-766236,
           767481-767607,768665-768769,768842-769424,769470-769775,
           770048-770139,770391-770440
          Length = 620

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -3

Query: 380 ELEPFSGSDFDFLTEGTTPSSAVLEPGPF 294
           E+ P SGS F+FLTE T  S     PG +
Sbjct: 354 EMMPVSGSPFNFLTETTIGSRIDQVPGGY 382


>08_01_0756 - 7161089-7161452,7161589-7161995
          Length = 256

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 393 LRTGYRTNRIWPLPLHAVGSM 455
           LRTG R  R WP+ L   G +
Sbjct: 236 LRTGQRGTRAWPMTLRTAGGV 256


>01_05_0220 - 19434011-19434802
          Length = 263

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -1

Query: 265 CEDSWAPGQFLPSYAGGRLCMVVAGTLKRLSLGGVALPTAYSLP 134
           C    AP +  PSY      + V  + +RL  GGVA+P   + P
Sbjct: 19  CHVGKAPLEVGPSYVRFLCALTVKYSTRRLGGGGVAVPLQPAAP 62


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.315    0.131    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,829,778
Number of Sequences: 37544
Number of extensions: 358050
Number of successful extensions: 1035
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1034
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)