Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20e13
         (572 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1952.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       27   2.6  
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa...    27   2.6  
SPAC343.01c |erg8||phosphomevalonate kinase |Schizosaccharomyces...    26   3.4  
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    26   4.5  

>SPAC1952.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 158

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -3

Query: 96 FFHFNIKMWILLRFYRVL 43
          F + N+K+W L+R YR++
Sbjct: 11 FINVNVKLWFLVRVYRLV 28


>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -3

Query: 393 LSCNCLSMSEYSLIVSVR-FEFSPTYIVATE 304
           ++C CL++  Y+L VS+R + FS   + + E
Sbjct: 343 INCECLNIKAYTLFVSLRKYSFSSKNVQSKE 373


>SPAC343.01c |erg8||phosphomevalonate kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -2

Query: 79  KNVDITSVLSSLRHRPWSSVIPIQL 5
           KN++ ++ L  +  + WS V+P QL
Sbjct: 247 KNINFSTELRKIVSKKWSDVVPFQL 271


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1254

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 253  LSHRVLHHTKINFYCF*FFSTQRDS 179
            +++ VLHH   N  C  FFST   S
Sbjct: 1117 IAYAVLHHLVSNIGCLGFFSTHYQS 1141


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,723,656
Number of Sequences: 5004
Number of extensions: 28705
Number of successful extensions: 48
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)