Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20e13
         (572 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF068717-3|AAC17762.2|  361|Caenorhabditis elegans Serpentine re...    32   0.25 
AC025724-5|AAG23374.1|  264|Caenorhabditis elegans Hypothetical ...    29   1.8  

>AF068717-3|AAC17762.2|  361|Caenorhabditis elegans Serpentine
           receptor, class w protein142 protein.
          Length = 361

 Score = 32.3 bits (70), Expect = 0.25
 Identities = 15/30 (50%), Positives = 21/30 (70%)
 Frame = -2

Query: 163 LVIIFVSLLLCSFSINFQLQFDVFSF*YKN 74
           L II VSL+ C  SI+  L++D+FS  YK+
Sbjct: 162 LAIIVVSLVFCPISISTFLEYDIFSEKYKS 191


>AC025724-5|AAG23374.1|  264|Caenorhabditis elegans Hypothetical
           protein Y67D8C.6 protein.
          Length = 264

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -2

Query: 139 LLCSFSINFQLQFDVFSF*YKNVDITSVL 53
           L  +F IN+ + F + SF YKNV I S++
Sbjct: 224 LFYNFEINYLIIFKLTSFIYKNVTIVSII 252


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,122,628
Number of Sequences: 27780
Number of extensions: 145958
Number of successful extensions: 258
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 258
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)