Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt20e10
(704 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70782-3|CAA94841.1| 347|Caenorhabditis elegans Hypothetical pr... 109 2e-24
Z70782-4|CAA94842.1| 347|Caenorhabditis elegans Hypothetical pr... 108 4e-24
Z81570-2|CAB04604.1| 349|Caenorhabditis elegans Hypothetical pr... 71 6e-13
Z81570-3|CAB04603.1| 351|Caenorhabditis elegans Hypothetical pr... 69 3e-12
AF125951-1|AAD14690.3| 326|Caenorhabditis elegans Hypothetical ... 69 3e-12
U18781-1|AAB03374.1| 384|Caenorhabditis elegans alcohol dehydro... 52 4e-07
AC006663-4|AAF39899.1| 384|Caenorhabditis elegans Hypothetical ... 52 4e-07
AC025722-1|AAK68507.1| 554|Caenorhabditis elegans Hypothetical ... 48 5e-06
AC006663-3|AAL32231.1| 386|Caenorhabditis elegans Hypothetical ... 48 9e-06
Z81044-9|CAB02812.2| 677|Caenorhabditis elegans Hypothetical pr... 31 0.80
AY314779-1|AAQ84886.1| 454|Caenorhabditis elegans secretin rece... 31 0.80
AL031620-2|CAA20927.2| 454|Caenorhabditis elegans Hypothetical ... 31 0.80
Z82081-5|CAB04958.1| 344|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z82062-5|CAB54319.4| 582|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z81122-6|CAB03358.1| 663|Caenorhabditis elegans Hypothetical pr... 29 3.2
U41107-6|AAC71165.3| 340|Caenorhabditis elegans Hypothetical pr... 29 4.3
DQ178246-1|ABA18185.1| 482|Caenorhabditis elegans TPX2-related ... 29 4.3
DQ178245-1|ABA18184.1| 507|Caenorhabditis elegans TPX2-related ... 29 4.3
AC025716-4|AAL32238.1| 482|Caenorhabditis elegans Tpx2 (targeti... 29 4.3
AC025716-2|AAK39617.1| 507|Caenorhabditis elegans Tpx2 (targeti... 29 4.3
Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical pr... 28 7.5
Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical pr... 28 7.5
Z50794-2|CAA90657.2| 681|Caenorhabditis elegans Hypothetical pr... 28 7.5
U40187-3|AAA81160.2| 430|Caenorhabditis elegans Ectopic membran... 28 7.5
AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein. 28 7.5
AC024214-17|AAF36082.1| 313|Caenorhabditis elegans Nuclear pore... 28 7.5
AL031630-2|CAA21000.1| 310|Caenorhabditis elegans Hypothetical ... 27 9.9
>Z70782-3|CAA94841.1| 347|Caenorhabditis elegans Hypothetical
protein R04B5.5 protein.
Length = 347
Score = 109 bits (262), Expect = 2e-24
Identities = 67/214 (31%), Positives = 114/214 (53%), Gaps = 3/214 (1%)
Frame = +3
Query: 39 MEAVVFDGKTLTLKYDNKYPLPKIENDDDVIVKVEYSGICGTDLHI-VQGEF-PASKERP 212
+ AV++ L L+ + P+PK + V+VKV GICG+D+H G P + P
Sbjct: 6 LSAVLYGVDDLRLE---QVPIPK-PGPNQVLVKVHTVGICGSDVHYWTHGAIGPFVVKEP 61
Query: 213 LPLGHEFSGTITDVGKKSVFRK-GQKVVVDPNRACSLCDFCRKGKYQYCLTAGINSTVGI 389
+ +GHE SG +++VG + K G ++ ++P C LC+ C+ G+Y C +T +
Sbjct: 62 MIVGHETSGIVSEVGNEVKHLKVGDRIAMEPGLPCKLCEHCKTGRYNLCPEMRFFATPPV 121
Query: 390 WRDGGWAQYVKVPQDQVYLLPDGVSTEQGGLCEPYSCVAHGYDRASPLLVGEKILIVGAG 569
G +++V D + LPD +S E G L EP S H R + + +G ++L++GAG
Sbjct: 122 --HGTLSRFVVHDADFCFKLPDNLSFEDGALIEPLSVAIHACRRGN-VQMGHRVLVLGAG 178
Query: 570 IIGNLWVTSLHQLGHRDVTVSEMNKVRLEIVNKL 671
IG L + + +G V +++++ RL + KL
Sbjct: 179 PIGVLNLITAKAVGAGKVVITDLDDGRLALAKKL 212
>Z70782-4|CAA94842.1| 347|Caenorhabditis elegans Hypothetical
protein R04B5.6 protein.
Length = 347
Score = 108 bits (259), Expect = 4e-24
Identities = 61/185 (32%), Positives = 102/185 (55%), Gaps = 3/185 (1%)
Frame = +3
Query: 126 VIVKVEYSGICGTDLHIVQGEFPAS--KERPLPLGHEFSGTITDVGKK-SVFRKGQKVVV 296
V+VK+ GICG+D+H + S + P+ LGHE SG ++++G + F+ G ++ +
Sbjct: 31 VLVKINTVGICGSDVHFLTHGAIGSFVVKEPMVLGHESSGVVSEIGSEVKGFKVGDRIAM 90
Query: 297 DPNRACSLCDFCRKGKYQYCLTAGINSTVGIWRDGGWAQYVKVPQDQVYLLPDGVSTEQG 476
+P C LC+ C+ G+Y C +T + +G +++V D + LPD +S E G
Sbjct: 91 EPGLPCKLCEHCKIGRYNLCPDMRFFATPPV--NGALSRFVVHDADFCFKLPDNLSFEDG 148
Query: 477 GLCEPYSCVAHGYDRASPLLVGEKILIVGAGIIGNLWVTSLHQLGHRDVTVSEMNKVRLE 656
L EP S VA R + +G+KIL++GAG IG L + + +G V ++++N RL
Sbjct: 149 ALLEPLS-VAIQACRRGTVQMGQKILVLGAGPIGVLNLLTAKAIGASKVVITDLNDERLA 207
Query: 657 IVNKL 671
+ L
Sbjct: 208 LARLL 212
>Z81570-2|CAB04604.1| 349|Caenorhabditis elegans Hypothetical
protein K12G11.3 protein.
Length = 349
Score = 71.3 bits (167), Expect = 6e-13
Identities = 60/205 (29%), Positives = 99/205 (48%), Gaps = 5/205 (2%)
Frame = +3
Query: 45 AVVFDGKTLTLKYDNKYPLPKIENDDDVIVKVEYSGICGTDLHIVQGEFPASKERPLPLG 224
A+VFD L+ + P+P DD+++VK+EYSGIC +DLH+ G+ PL G
Sbjct: 11 ALVFDTWNGPLEV-RQVPVPS-PADDEILVKIEYSGICHSDLHVWLGDLKDMSVCPLVGG 68
Query: 225 HEFSGTITDVGKK-SVFRKGQKVVVD-PNRACSLCDFCRKGKYQYCLTAGINSTVGIWRD 398
HE +G++ +GK + ++ G K V N C C+FC+KG C G R
Sbjct: 69 HEGAGSVVQIGKNVTGWQLGDKAGVKLMNFNCLNCEFCKKGHEPLCHHI---QNYGFDRS 125
Query: 399 GGWAQYVKV-PQDQVYLLPD-GVSTEQGGLCEPYSCVAHGYDRASPLLVGEKILIVGA-G 569
G + +Y+ + D + D ++ LC + + S + G+ I++ GA G
Sbjct: 126 GTFQEYLTIRGVDAAKINKDTNLAAAAPILCA--GVTVYKALKESNVAPGQIIVLTGAGG 183
Query: 570 IIGNLWVTSLHQLGHRDVTVSEMNK 644
+G+L + +G R V + +K
Sbjct: 184 GLGSLAIQYACAMGMRVVAMDHGSK 208
>Z81570-3|CAB04603.1| 351|Caenorhabditis elegans Hypothetical
protein K12G11.4 protein.
Length = 351
Score = 68.9 bits (161), Expect = 3e-12
Identities = 50/181 (27%), Positives = 91/181 (50%), Gaps = 5/181 (2%)
Frame = +3
Query: 117 DDDVIVKVEYSGICGTDLHIVQGEFPASKERPLPLGHEFSGTITDVGKK-SVFRKGQKVV 293
+++++VK+EYSGIC +DLH +G+F + PL GHE +GT+ +G K + G +
Sbjct: 34 ENELLVKIEYSGICHSDLHTWEGDFEYASICPLIGGHEGAGTVVTIGSKVKGWNIGDRAG 93
Query: 294 VD-PNRACSLCDFCRKGKYQYCLTAGINSTVGIWRDGGWAQYVKVPQ-DQVYLLPD-GVS 464
+ N C C++C+ G C GI R G + +Y+ + D + + D ++
Sbjct: 94 IKLINANCLNCEYCKTGHEPLC---DHIQNYGIDRHGTFQEYLTIRDIDAIKVSNDTNLA 150
Query: 465 TEQGGLCEPYSCVAHGYDRASPLLVGEKILIVGA-GIIGNLWVTSLHQLGHRDVTVSEMN 641
LC A+ +A+ + G+ +++ GA G +G+ + +G R V V ++
Sbjct: 151 AAAPVLCG--GVTAYKSLKATNVKPGQIVVLTGAGGGLGSFGIQYAKAMGMRVVAVDHIS 208
Query: 642 K 644
K
Sbjct: 209 K 209
>AF125951-1|AAD14690.3| 326|Caenorhabditis elegans Hypothetical
protein D2063.1 protein.
Length = 326
Score = 68.9 bits (161), Expect = 3e-12
Identities = 52/207 (25%), Positives = 100/207 (48%), Gaps = 5/207 (2%)
Frame = +3
Query: 45 AVVFD--GKTLTLKYDNKYPLPKIENDDDVIVKVEYSGICGTDLHIVQGEFPASKERPLP 218
A++F+ G L +K + P+P+ N+D+++VK+EYSGIC +D+H G+F + P+
Sbjct: 12 ALIFESYGGPLEIK---QLPIPQ-PNEDELLVKMEYSGICHSDVHTWLGDFHYVSKCPMI 67
Query: 219 LGHEFSGTITDVGKK-SVFRKGQKVVVDPNRA-CSLCDFCRKGKYQYCLTAGINSTVGIW 392
GHE +G++ VG K ++ G KV + + C C++C+ G C +G+
Sbjct: 68 GGHEGAGSVISVGSKVKNWQIGDKVGIKLVQGNCLNCEYCQTGHEPLCPHVW---NIGVQ 124
Query: 393 RDGGWAQYVKVPQDQVYLLPDGVSTEQGGLCEPYSCVAHGYDRASPLLVGEKILIVGA-G 569
+ G + +Y + +P ++ A+ + S + G+ + + GA G
Sbjct: 125 KYGTFQEYATIRDVDAIKIPKSMNMAAAAPVLCGGVTAYKALKESEVKSGQIVAVTGAGG 184
Query: 570 IIGNLWVTSLHQLGHRDVTVSEMNKVR 650
+G+ + +G R V + +R
Sbjct: 185 GLGSFAIQYARAMGMRVVAEDIVAHIR 211
>U18781-1|AAB03374.1| 384|Caenorhabditis elegans alcohol
dehydrogenase protein.
Length = 384
Score = 52.0 bits (119), Expect = 4e-07
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Frame = +3
Query: 123 DVIVKVEYSGICGTDLHIVQGEFPASKERPLPLGHEFSGTITDVGK-KSVFRKGQKVVVD 299
+V VK+ Y+ +C TD + + G P P+ LGHE SG + VG+ + F G VV
Sbjct: 37 EVRVKILYTAVCHTDAYTLDGHDPEGL-FPVVLGHEGSGIVESVGEGVTGFAPGDHVVPL 95
Query: 300 PNRACSLCDFCRKGKYQYCLTAGINSTVGIWRDG 401
C C++C+ K C I+ G DG
Sbjct: 96 YVPQCKECEYCKNPKTNLCQKIRISQGNGFMPDG 129
>AC006663-4|AAF39899.1| 384|Caenorhabditis elegans Hypothetical
protein H24K24.3a protein.
Length = 384
Score = 52.0 bits (119), Expect = 4e-07
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Frame = +3
Query: 123 DVIVKVEYSGICGTDLHIVQGEFPASKERPLPLGHEFSGTITDVGK-KSVFRKGQKVVVD 299
+V VK+ Y+ +C TD + + G P P+ LGHE SG + VG+ + F G VV
Sbjct: 37 EVRVKILYTAVCHTDAYTLDGHDPEGL-FPVVLGHEGSGIVESVGEGVTGFAPGDHVVPL 95
Query: 300 PNRACSLCDFCRKGKYQYCLTAGINSTVGIWRDG 401
C C++C+ K C I+ G DG
Sbjct: 96 YVPQCKECEYCKNPKTNLCQKIRISQGNGFMPDG 129
>AC025722-1|AAK68507.1| 554|Caenorhabditis elegans Hypothetical
protein Y50D4C.2 protein.
Length = 554
Score = 48.4 bits (110), Expect = 5e-06
Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Frame = +3
Query: 144 YSGICGTDLHIVQGEFPASKERPLPLGHEFSGTITDVGK-KSVFRKGQKVVVDPNRACSL 320
Y+ +C TD + + G P P+ LGHE SG + VGK + F G VV C
Sbjct: 217 YTSVCHTDAYTLDGHDPEGLF-PVVLGHEGSGIVESVGKGVTGFAPGDHVVPLYVPQCKE 275
Query: 321 CDFCRKGKYQYCLTAGINSTVGIWRDG 401
C++C+ K C ++ G DG
Sbjct: 276 CEYCKNPKTNMCQKIRVSQGDGFMPDG 302
>AC006663-3|AAL32231.1| 386|Caenorhabditis elegans Hypothetical
protein H24K24.3b protein.
Length = 386
Score = 47.6 bits (108), Expect = 9e-06
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Frame = +3
Query: 135 KVEYSGICGTDLHIVQGEFPASKERPLPLGHEFSGTITDVGKKSV-FRKGQKVVVDPNRA 311
++ Y+ +C TD + + G P P+ LGHE SG + VG+ F G VV
Sbjct: 43 QILYTAVCHTDAYTLDGHDPEGLF-PVVLGHEGSGIVESVGEGVTGFAPGDHVVPLYVPQ 101
Query: 312 CSLCDFCRKGKYQYCLTAGINSTVGIWRDG 401
C C++C+ K C I+ G DG
Sbjct: 102 CKECEYCKNPKTNLCQKIRISQGNGFMPDG 131
>Z81044-9|CAB02812.2| 677|Caenorhabditis elegans Hypothetical
protein C30H6.6 protein.
Length = 677
Score = 31.1 bits (67), Expect = 0.80
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Frame = +3
Query: 351 YCLT-AGINSTVGIWRDGGWAQYVKVPQDQVYLLPDGVSTEQGGLCEPYSCVAHGYDRAS 527
YCL AG+N VG R ++ ++ QD + D + G V GY +S
Sbjct: 157 YCLQIAGVN-IVGSLRKMVYSSIIR--QDMTFF--DKNMVGEIGSRHAADTVIVGYSVSS 211
Query: 528 PLLVGEKILIVGAGIIGNLWVTSL 599
L G + ++VG G IG + +TSL
Sbjct: 212 SLRAGVRAVLVGVGSIGMMLMTSL 235
>AY314779-1|AAQ84886.1| 454|Caenorhabditis elegans secretin
receptor-like proteinSEB-3 protein.
Length = 454
Score = 31.1 bits (67), Expect = 0.80
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +3
Query: 279 GQKVVVD-PNRACSLCDFCRKGKYQYCLTAGINSTVGIWRDGGWAQYVKVPQDQVYLL 449
GQ++ D P C+ C + K +Y ++ NS +G+W+D + +KV ++ L
Sbjct: 44 GQQMTRDCPFTFCTAIPGCEEIKDRYMVSRNCNS-MGVWQDSNYTMCIKVVEEYAQCL 100
>AL031620-2|CAA20927.2| 454|Caenorhabditis elegans Hypothetical
protein C18B12.2 protein.
Length = 454
Score = 31.1 bits (67), Expect = 0.80
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +3
Query: 279 GQKVVVD-PNRACSLCDFCRKGKYQYCLTAGINSTVGIWRDGGWAQYVKVPQDQVYLL 449
GQ++ D P C+ C + K +Y ++ NS +G+W+D + +KV ++ L
Sbjct: 44 GQQMTRDCPFTFCTAIPGCEEIKDRYMVSRNCNS-MGVWQDSNYTMCIKVVEEYAQCL 100
>Z82081-5|CAB04958.1| 344|Caenorhabditis elegans Hypothetical
protein W09H1.5 protein.
Length = 344
Score = 29.9 bits (64), Expect = 1.9
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +3
Query: 120 DDVIVKVEYSGICGTDLHIVQGEFPASKERPLPLGHEFSGTITDVGKK-SVFRKGQKVVV 296
D V+V+ + I DL+ +QG +P P G+E G + VG S + G V+
Sbjct: 46 DQVLVQWIAAPINPADLNQIQGVYPVKPALPAVGGNEGFGKVISVGSNVSSIKVGDHVIP 105
Query: 297 D 299
D
Sbjct: 106 D 106
>Z82062-5|CAB54319.4| 582|Caenorhabditis elegans Hypothetical
protein W02A11.4 protein.
Length = 582
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = +3
Query: 534 LVGEKILIVGAGIIGNLWVTSLHQLGHRDVTVSEMNKVRLEIVNK 668
+V KIL++GAG IG + +L G R V V +++ + + +N+
Sbjct: 11 IVQSKILVIGAGGIGCELLKNLAVTGFRKVHVIDLDTIDISNLNR 55
>Z81122-6|CAB03358.1| 663|Caenorhabditis elegans Hypothetical
protein T13F2.7 protein.
Length = 663
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -1
Query: 410 GPASVPPDPDGTVNTGGQAVLVFSFT-TEITEAAGSVRIHDD 288
G + D DG V GG+A+ S+ T+A+G VR +DD
Sbjct: 405 GDVDMDSDDDGNVTIGGEALSFDSWARITKTKASGVVRANDD 446
>U41107-6|AAC71165.3| 340|Caenorhabditis elegans Hypothetical
protein F55C12.6 protein.
Length = 340
Score = 28.7 bits (61), Expect = 4.3
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +3
Query: 81 YDNKYPLPKIENDDDVIVK 137
YD K P+PKI++D +++VK
Sbjct: 171 YDFKVPIPKIKDDCEIVVK 189
>DQ178246-1|ABA18185.1| 482|Caenorhabditis elegans TPX2-related
alternative variant b protein.
Length = 482
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -2
Query: 562 PTMRIFSPTSRGEARS*PCATQEYGSHRPPCSVDTP 455
P ++ +S S +R PC T + +H P DTP
Sbjct: 21 PKVKDYSRLSSSPSRDQPCETSYFENHFPSLECDTP 56
>DQ178245-1|ABA18184.1| 507|Caenorhabditis elegans TPX2-related
alternative variant a protein.
Length = 507
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -2
Query: 562 PTMRIFSPTSRGEARS*PCATQEYGSHRPPCSVDTP 455
P ++ +S S +R PC T + +H P DTP
Sbjct: 21 PKVKDYSRLSSSPSRDQPCETSYFENHFPSLECDTP 56
>AC025716-4|AAL32238.1| 482|Caenorhabditis elegans Tpx2 (targeting
protein for xenopusklp2)-like protein 1, isoform b
protein.
Length = 482
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -2
Query: 562 PTMRIFSPTSRGEARS*PCATQEYGSHRPPCSVDTP 455
P ++ +S S +R PC T + +H P DTP
Sbjct: 21 PKVKDYSRLSSSPSRDQPCETSYFENHFPSLECDTP 56
>AC025716-2|AAK39617.1| 507|Caenorhabditis elegans Tpx2 (targeting
protein for xenopusklp2)-like protein 1, isoform a
protein.
Length = 507
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -2
Query: 562 PTMRIFSPTSRGEARS*PCATQEYGSHRPPCSVDTP 455
P ++ +S S +R PC T + +H P DTP
Sbjct: 21 PKVKDYSRLSSSPSRDQPCETSYFENHFPSLECDTP 56
>Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical protein
T14G8.1 protein.
Length = 1787
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +2
Query: 194 GFQRAPPTAWSRIQWHHYGCWEEVCLQERSEGRRGSEQ 307
G + P W ++ HHY +E LQ+ +G+R Q
Sbjct: 1205 GTEEQDPNYWEKLLKHHYEQDQETELQKLGKGKRVRRQ 1242
>Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical protein
T14G8.1 protein.
Length = 1787
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +2
Query: 194 GFQRAPPTAWSRIQWHHYGCWEEVCLQERSEGRRGSEQ 307
G + P W ++ HHY +E LQ+ +G+R Q
Sbjct: 1205 GTEEQDPNYWEKLLKHHYEQDQETELQKLGKGKRVRRQ 1242
>Z50794-2|CAA90657.2| 681|Caenorhabditis elegans Hypothetical
protein F59F5.3 protein.
Length = 681
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/42 (33%), Positives = 27/42 (64%), Gaps = 3/42 (7%)
Frame = +3
Query: 549 ILIVGAGIIGNLWV---TSLHQLGHRDVTVSEMNKVRLEIVN 665
+LI+GAG+I ++V SL Q + V+ +++ + R+E +N
Sbjct: 324 LLIIGAGLILTIFVILTKSLRQNNYNKVSTTDVRETRIEELN 365
>U40187-3|AAA81160.2| 430|Caenorhabditis elegans Ectopic membrane
ruffles in embryoprotein 1 protein.
Length = 430
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/45 (31%), Positives = 26/45 (57%)
Frame = +3
Query: 534 LVGEKILIVGAGIIGNLWVTSLHQLGHRDVTVSEMNKVRLEIVNK 668
L KIL++GAG +G + +L G R + V +M+ + + +N+
Sbjct: 40 LQNTKILVIGAGGLGCELLKNLALSGFRTIEVIDMDTIDVSNLNR 84
>AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein.
Length = 1787
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +2
Query: 194 GFQRAPPTAWSRIQWHHYGCWEEVCLQERSEGRRGSEQ 307
G + P W ++ HHY +E LQ+ +G+R Q
Sbjct: 1205 GTEEQDPNYWEKLLKHHYEQDQETELQKLGKGKRVRRQ 1242
>AC024214-17|AAF36082.1| 313|Caenorhabditis elegans Nuclear pore
complex protein protein20, isoform a protein.
Length = 313
Score = 27.9 bits (59), Expect = 7.5
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3
Query: 363 AGINSTVGIWRDGGWAQYVKVPQD 434
AG ++ + IWR+ Q++KVP+D
Sbjct: 272 AGDDNVITIWRENLQGQWIKVPRD 295
>AL031630-2|CAA21000.1| 310|Caenorhabditis elegans Hypothetical
protein Y38H6C.2 protein.
Length = 310
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = -2
Query: 385 PTVLLIPAVKQYWYFPLRQKSQRLQALFGSTTTF*PFLKTDF 260
P + I V YW + S+RL A+FG T +L F
Sbjct: 40 PPISYIATVLDYWAGATEENSRRLVAIFGVLMTAIQYLTLKF 81
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,767,128
Number of Sequences: 27780
Number of extensions: 407155
Number of successful extensions: 1116
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1109
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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