SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20e05
         (693 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch...    97   2e-21
SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr 3|||Ma...    71   2e-13
SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces...    69   6e-13
SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces pomb...    53   5e-08
SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyce...    49   7e-07
SPAC926.03 |rlc1||myosin II regulatory light chain |Schizosaccha...    42   1e-04
SPAC18B11.04 |ncs1||related to neuronal calcium sensor Ncs1|Schi...    41   2e-04
SPAC1687.14c |||EF hand family protein, unknown role|Schizosacch...    37   0.002
SPBC11G11.02c |end3||actin cortical patch component End3 |Schizo...    31   0.12 
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    31   0.12 
SPAC25B8.09 |||trans-aconitate 3-methyltransferase |Schizosaccha...    29   0.84 
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce...    27   2.6  
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo...    27   3.4  
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc...    27   3.4  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    27   3.4  
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos...    26   4.5  
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha...    26   4.5  
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual     26   5.9  
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    25   7.9  
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy...    25   7.9  

>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 150

 Score = 97.1 bits (231), Expect = 2e-21
 Identities = 53/150 (35%), Positives = 84/150 (56%)
 Frame = +2

Query: 92  VSDLRTAFGLLDRDSDGHVTPAELQFMLRNLGIEVSDDLISDLIKDASKTGNGLIDENDF 271
           +++ R AF L DRD DG++T  EL  ++R+LG   +   + D+I +    GNG ID  +F
Sbjct: 11  IAEFREAFSLFDRDQDGNITSNELGVVMRSLGQSPTAAELQDMINEVDADGNGTIDFTEF 70

Query: 272 MQWVTKIQALQGLDVTTSGGDSEEEITRDLLAAFKVFDRDDNGYITRDELQAALEMIGEP 451
           +  + +              D+EEE+      AFKVFD+D NGYIT +EL   L  +GE 
Sbjct: 71  LTMMAR---------KMKDTDNEEEVRE----AFKVFDKDGNGYITVEELTHVLTSLGER 117

Query: 452 VTDAQLNQVLALGDIDHDGRIDYEEFVKML 541
           ++  ++  ++   D D DG I+YEEF +++
Sbjct: 118 LSQEEVADMIREADTDGDGVINYEEFSRVI 147



 Score = 51.6 bits (118), Expect = 1e-07
 Identities = 25/69 (36%), Positives = 42/69 (60%)
 Frame = +2

Query: 335 SEEEITRDLLAAFKVFDRDDNGYITRDELQAALEMIGEPVTDAQLNQVLALGDIDHDGRI 514
           ++E+I  +   AF +FDRD +G IT +EL   +  +G+  T A+L  ++   D D +G I
Sbjct: 7   TDEQIA-EFREAFSLFDRDQDGNITSNELGVVMRSLGQSPTAAELQDMINEVDADGNGTI 65

Query: 515 DYEEFVKML 541
           D+ EF+ M+
Sbjct: 66  DFTEFLTMM 74



 Score = 50.4 bits (115), Expect = 2e-07
 Identities = 20/63 (31%), Positives = 43/63 (68%)
 Frame = +2

Query: 98  DLRTAFGLLDRDSDGHVTPAELQFMLRNLGIEVSDDLISDLIKDASKTGNGLIDENDFMQ 277
           ++R AF + D+D +G++T  EL  +L +LG  +S + ++D+I++A   G+G+I+  +F +
Sbjct: 86  EVREAFKVFDKDGNGYITVEELTHVLTSLGERLSQEEVADMIREADTDGDGVINYEEFSR 145

Query: 278 WVT 286
            ++
Sbjct: 146 VIS 148


>SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 176

 Score = 70.5 bits (165), Expect = 2e-13
 Identities = 43/149 (28%), Positives = 75/149 (50%)
 Frame = +2

Query: 98  DLRTAFGLLDRDSDGHVTPAELQFMLRNLGIEVSDDLISDLIKDASKTGNGLIDENDFMQ 277
           D+  AF L D D D  +   EL+  +R LG       +  +++D  KTG G +   DF++
Sbjct: 38  DINEAFKLFDSDKDNAIDYHELRAAMRALGFNAEKSEVLKILRDFDKTGKGYLQMEDFVR 97

Query: 278 WVTKIQALQGLDVTTSGGDSEEEITRDLLAAFKVFDRDDNGYITRDELQAALEMIGEPVT 457
            +T+    +         D  EEI R    AF++FD D+ G I+   L+   + + E + 
Sbjct: 98  VMTEKIVER---------DPLEEIKR----AFELFDDDETGKISLRNLRRVAKELNENID 144

Query: 458 DAQLNQVLALGDIDHDGRIDYEEFVKMLL 544
           D +L  ++   D+D DG I+ +EF+ +++
Sbjct: 145 DQELEAMIEEFDLDQDGEINEQEFIAIMM 173



 Score = 39.9 bits (89), Expect = 3e-04
 Identities = 21/67 (31%), Positives = 38/67 (56%)
 Frame = +2

Query: 341 EEITRDLLAAFKVFDRDDNGYITRDELQAALEMIGEPVTDAQLNQVLALGDIDHDGRIDY 520
           EE  +D+  AFK+FD D +  I   EL+AA+  +G     +++ ++L   D    G +  
Sbjct: 33  EEQRQDINEAFKLFDSDKDNAIDYHELRAAMRALGFNAEKSEVLKILRDFDKTGKGYLQM 92

Query: 521 EEFVKML 541
           E+FV+++
Sbjct: 93  EDFVRVM 99


>SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score = 68.9 bits (161), Expect = 6e-13
 Identities = 47/149 (31%), Positives = 85/149 (57%)
 Frame = +2

Query: 98  DLRTAFGLLDRDSDGHVTPAELQFMLRNLGIEVSDDLISDLIKDASKTGNGLIDENDFMQ 277
           +++ AF L D D DG +  + +  +LR+LGI V+D   ++L K +++ G+  IDE  FM 
Sbjct: 10  EMKEAFVLYDIDKDGLIPTSHVGSVLRSLGINVTD---AELAKLSNELGDA-IDEKKFMS 65

Query: 278 WVTKIQALQGLDVTTSGGDSEEEITRDLLAAFKVFDRDDNGYITRDELQAALEMIGEPVT 457
           +V+       L  T    +SEEE  +    AF+VFD+D++GYI   +    ++ +GE ++
Sbjct: 66  FVSN-----KLRET----ESEEEYIK----AFRVFDKDNSGYIETAKFADYMKTLGEKLS 112

Query: 458 DAQLNQVLALGDIDHDGRIDYEEFVKMLL 544
           D ++  ++   D  + G  DY +FV+ ++
Sbjct: 113 DNEVQLMVQEADPTNSGSFDYYDFVQRIM 141


>SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 141

 Score = 52.8 bits (121), Expect = 5e-08
 Identities = 41/150 (27%), Positives = 73/150 (48%)
 Frame = +2

Query: 95  SDLRTAFGLLDRDSDGHVTPAELQFMLRNLGIEVSDDLISDLIKDASKTGNGLIDENDFM 274
           S  + AF L DR   G +    +  +LR  G   +       + + ++  + L  E D  
Sbjct: 6   SPYKQAFSLFDRHGTGRIPKTSIGDLLRACGQNPT-------LAEITEIESTLPAEVDME 58

Query: 275 QWVTKIQALQGLDVTTSGGDSEEEITRDLLAAFKVFDRDDNGYITRDELQAALEMIGEPV 454
           Q++  +    G D+    GD EE      +  F+VFD+D  G I   EL+  L  +GE +
Sbjct: 59  QFLQVLNRPNGFDMP---GDPEE-----FVKGFQVFDKDATGMIGVGELRYVLTSLGEKL 110

Query: 455 TDAQLNQVLALGDIDHDGRIDYEEFVKMLL 544
           ++ +++++L  G    DG ++Y +FV+M+L
Sbjct: 111 SNEEMDELLK-GVPVKDGMVNYHDFVQMIL 139


>SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 174

 Score = 48.8 bits (111), Expect = 7e-07
 Identities = 44/151 (29%), Positives = 72/151 (47%), Gaps = 5/151 (3%)
 Frame = +2

Query: 92  VSDLRTAFGLLDRDSDGHVTPAELQFMLRNLGIEVSDDLISDLIKDASKTGNGLIDENDF 271
           +  +R  F  +D +  G +   E  F+  ++    S+ L S L     + G G +D  +F
Sbjct: 23  IERIRKRFIKIDANQSGSIDRNE--FL--SIPSVASNPLASRLFSVVDEDGGGDVDFQEF 78

Query: 272 MQWVTKIQALQGLDVTTSGGDSEEEITRDLLAAFKVFDRDDNGYITRDELQAALE-MIGE 448
                    +  L V +  G+ EE+    L  AFK++D D +GYI+  EL   L+ M+G 
Sbjct: 79  ---------INSLSVFSVHGNKEEK----LKFAFKIYDIDRDGYISNGELYLVLKMMVGT 125

Query: 449 PVTDAQLNQV----LALGDIDHDGRIDYEEF 529
            + + QL Q+    +   D D DG+I +EEF
Sbjct: 126 NLREDQLQQIVDKTIMEVDKDRDGKISFEEF 156



 Score = 31.9 bits (69), Expect = 0.090
 Identities = 20/77 (25%), Positives = 39/77 (50%)
 Frame = +2

Query: 311 DVTTSGGDSEEEITRDLLAAFKVFDRDDNGYITRDELQAALEMIGEPVTDAQLNQVLALG 490
           D+ ++   S EEI R +   F   D + +G I R+E  +   +   P+     +++ ++ 
Sbjct: 11  DLISNSSFSNEEIER-IRKRFIKIDANQSGSIDRNEFLSIPSVASNPLA----SRLFSVV 65

Query: 491 DIDHDGRIDYEEFVKML 541
           D D  G +D++EF+  L
Sbjct: 66  DEDGGGDVDFQEFINSL 82


>SPAC926.03 |rlc1||myosin II regulatory light chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 184

 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 36/147 (24%), Positives = 65/147 (44%)
 Frame = +2

Query: 92  VSDLRTAFGLLDRDSDGHVTPAELQFMLRNLGIEVSDDLISDLIKDASKTGNGLIDENDF 271
           + +L+ AF LLD+D DG++   +++ ML +L  + S+D I+ + +            N  
Sbjct: 47  IQELKEAFALLDKDGDGNIGREDVKTMLTSLNQDASEDSINHMFESI----------NPP 96

Query: 272 MQWVTKIQALQGLDVTTSGGDSEEEITRDLLAAFKVFDRDDNGYITRDELQAALEMIGEP 451
           +     + A+  +    S          DLL AF  FD   +G I    ++ AL  +G+ 
Sbjct: 97  INLAAFLTAMGSMLCRISP-------RNDLLEAFSTFDDTQSGKIPISTMRDALSSMGDR 149

Query: 452 VTDAQLNQVLALGDIDHDGRIDYEEFV 532
           +   ++  +L        G   YE+FV
Sbjct: 150 MDPQEVESILR--SYTSHGVFYYEKFV 174


>SPAC18B11.04 |ncs1||related to neuronal calcium sensor
           Ncs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 20/57 (35%), Positives = 31/57 (54%)
 Frame = +2

Query: 371 FKVFDRDDNGYITRDELQAALEMIGEPVTDAQLNQVLALGDIDHDGRIDYEEFVKML 541
           F VFD D NGYI   E   AL +      + +L     L D+D++G I Y+E ++++
Sbjct: 69  FNVFDADKNGYIDFKEFICALSVTSRGELNDKLIWAFQLYDLDNNGLISYDEMLRIV 125



 Score = 37.1 bits (82), Expect = 0.002
 Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 12/77 (15%)
 Frame = +2

Query: 335 SEEEITRDLLAAFKVFDRDDNGYITRDEL----QAALEMIG--------EPVTDAQLNQV 478
           S  E+   L+ AF+++D D+NG I+ DE+     A  +M+G        E   + ++N++
Sbjct: 93  SRGELNDKLIWAFQLYDLDNNGLISYDEMLRIVDAIYKMVGSMVKLPEDEDTPEKRVNKI 152

Query: 479 LALGDIDHDGRIDYEEF 529
             + D + DG++  EEF
Sbjct: 153 FNMMDKNKDGQLTLEEF 169


>SPAC1687.14c |||EF hand family protein, unknown
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 76

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 20/65 (30%), Positives = 35/65 (53%)
 Frame = +2

Query: 344 EITRDLLAAFKVFDRDDNGYITRDELQAALEMIGEPVTDAQLNQVLALGDIDHDGRIDYE 523
           E+  +   AF +FD    GYI  ++L+ +   +GE +T  QL  +L L     +G++  E
Sbjct: 9   EMDEEAEEAFDLFDVTHKGYIDFEDLRRSCAQLGENLTKEQLQLMLDLAGT--NGKVSRE 66

Query: 524 EFVKM 538
           EF ++
Sbjct: 67  EFAEL 71


>SPBC11G11.02c |end3||actin cortical patch component End3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 375

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +2

Query: 392 DNGYITRDELQAALEMIGEPVTDAQLNQVLALGDIDHDGRIDYEEF 529
           +NGY++  +    L      ++  +L ++  L DID DG  D++EF
Sbjct: 19  ENGYLSGSKAAGVLR--SSKLSSDKLEKIWDLADIDDDGMFDFDEF 62


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +2

Query: 350 TRDLLAAFKVFDRDDNGYITRDELQAALEMIGEPVTDAQLNQVLALGD 493
           + +L   +   D  D GYI +DE   A+E+I   ++   L  +LA  D
Sbjct: 335 SEELARIWDTVDTQDRGYIDKDEFAVAMEIIKLRLSGKSLASILAYDD 382


>SPAC25B8.09 |||trans-aconitate 3-methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 251

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -1

Query: 273 MKSFSSIKPLPVLLASLMRSEMRSSLTSMPRLRN 172
           M SFSSI  LPV     M +E+   + ++PR +N
Sbjct: 197 MNSFSSINRLPVEEKEKMHAELDEIIKTIPRAQN 230


>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1151

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
 Frame = -1

Query: 351 VISSSESPPLVVTSKPCKACIFVTHCMKSFSSIKPLPVLLASLMRSEMRSSLTSMPRLRN 172
           V+S S + P +VT  P ++        +  SS +    L   L  S+  S   S   L++
Sbjct: 475 VLSKSNTVPNLVTGFPTRSDNPPNEKRRRTSSSENSRALDIQLSASDSHSP-NSKSTLKS 533

Query: 171 MNCSSAGVT*-PSLSRSNSPNAVRRSDTKNSFLITRV 64
           +  S+  ++  PS+    +P+ V  S +KN F + RV
Sbjct: 534 VEGSAFSMSKSPSVLSMTTPSGVSPSISKNGFHVVRV 570


>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
           Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = -1

Query: 270 KSFSSIKPLPVLLASLMRSEMRSSLTSMPRLRNMNCSSAGVT*PSLSR 127
           +S SS+ P P      M S M  ++ SMP L N + ++ G T   +SR
Sbjct: 346 QSKSSVFPQPASAMKPMASPMLPNVNSMPYLSNGDHNNNGNTSSPVSR 393


>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 735

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
 Frame = -1

Query: 270 KSFSSIKPLPVL--LASLMRSEMRSSLTSMPRLRNMNCSSAGVT*PSLSRSNSPNAVRRS 97
           ++FSS  PLP L  LASL  +E R S  S+ ++ +    S+  T PS     SP+ +  S
Sbjct: 419 ENFSSW-PLPPLMDLASLSVAEPRDSQPSVSQVNDTFVKSSDSTFPSSQSMQSPSKL-HS 476

Query: 96  DTKNS 82
            T N+
Sbjct: 477 LTSNA 481


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 7/111 (6%)
 Frame = -1

Query: 381  NTLNAASRSLVISSSESP-----PLVVTS-KPCK-ACIFVTHCMKSFSSIKPLPVLLASL 223
            N L     ++ I+S+ES      PL+ T   P + A +F   C+    ++   P L+ SL
Sbjct: 871  NHLRGLQETIKITSAESLFSMVLPLIFTEFSPIREAVVFAIGCI----NVNAFPQLVRSL 926

Query: 222  MRSEMRSSLTSMPRLRNMNCSSAGVT*PSLSRSNSPNAVRRSDTKNSFLIT 70
                      S+ +  +     AG+  PS+ R N P+ + RS+  + F +T
Sbjct: 927  ------KPYISVLKQDHQEFIFAGLNFPSVKRRNKPDLLLRSEIAHIFAMT 971


>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
           Plc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 899

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/75 (17%), Positives = 35/75 (46%)
 Frame = +2

Query: 305 GLDVTTSGGDSEEEITRDLLAAFKVFDRDDNGYITRDELQAALEMIGEPVTDAQLNQVLA 484
           GL++    G+   + + +L   ++  +++ +  +   ++    +M+    +   L +   
Sbjct: 282 GLNLVCHQGEKMIDYSENL-NPWEKLEKEQSAQLDLGDVHRMCQMLHLNASMEFLEETFQ 340

Query: 485 LGDIDHDGRIDYEEF 529
             D DH G++ +EEF
Sbjct: 341 KADADHSGKLSFEEF 355


>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
           Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 697

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +2

Query: 191 EVSDDLISDLIKDASKTGNGLIDENDFMQ 277
           E  ++++S L+++   TGN L  + DF Q
Sbjct: 402 ETLNNMVSALVEEQQSTGNELFRKGDFSQ 430


>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1029

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +2

Query: 125  DRDSDGHVTPAELQFMLRNLGIEVSDDLISDLIKDASKTGNGLIDEN 265
            + D D  V    +++   +LG E+S D++ D  +     GN L+DE+
Sbjct: 919  EADDDEGVDDFAVEYGGPDLGGEISADVVDDFDEFEHFQGNYLLDED 965


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = -1

Query: 255 IKPLPVLLASLMRSEMRSSLTSMPRLRNMNCSSAGVT*P-SLSRSNSP 115
           ++PLP+ L S+   E   S  S+PR      SSA +T P S+++SN P
Sbjct: 719 LRPLPLELLSISYIEDSPSRGSLPR----RPSSALLTNPISITKSNPP 762


>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 648

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +2

Query: 137 DGHVTPAE--LQFMLRNLGIEVSDDLISDLIKDASKTGN 247
           DG V   E  L+ M + LG+E SDD   DL K +  + N
Sbjct: 545 DGRVGREEAWLKSMAQELGVESSDDEDPDLPKKSESSKN 583


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,606,800
Number of Sequences: 5004
Number of extensions: 48908
Number of successful extensions: 185
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -