Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20d18
         (591 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC959.04c |||mannosyltransferase |Schizosaccharomyces pombe|ch...    28   0.89 
SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit Nse6|Schizosa...    27   1.5  
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S...    27   2.7  
SPCC126.10 |iah1||isoamyl acetate hydrolytic enzyme Iah1 |Schizo...    26   4.7  
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar...    25   6.2  
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    25   8.3  

>SPAC959.04c |||mannosyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 298

 Score = 28.3 bits (60), Expect = 0.89
 Identities = 12/48 (25%), Positives = 22/48 (45%)
 Frame = -3

Query: 292 NGWIFNNHYIQTKYHHVNKSFVFKLFIHLYIKYVLVSFVRKTSSAYIH 149
           N W+++N+Y   KY   N+    K   H      L++++  +   Y H
Sbjct: 202 NIWVYSNNYTYCKYWPFNEILSLKQIRHNQTYTNLINYLLGSGGTYYH 249


>SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit
           Nse6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 522

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +3

Query: 33  TNLRIKQKNFLFCCGVL 83
           +NL+IK  NFL CCG L
Sbjct: 263 SNLKIKVINFLKCCGTL 279


>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
           Vma6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 22/93 (23%), Positives = 42/93 (45%)
 Frame = +2

Query: 293 TTKLCAKCYRKILSFHKFKSLAIENDIYLESQCTSAKHQIPLNNNENEIGPTQQFSIQMV 472
           T  L AK YR+++ ++  KSL       L   C      + L    N     +   +  +
Sbjct: 525 TNLLSAKMYRELVEYYYGKSLHEAALDLLTKLCDEPTDTLSLKGKSNTTSKYEPI-LSYL 583

Query: 473 DCLSPEMNNKDIIFREQVKTEMVLAHDEENDSI 571
           + LSPE+++  +IF+    + + L+ D +N  +
Sbjct: 584 EKLSPELDH--LIFK---YSRVPLSEDPQNSIV 611


>SPCC126.10 |iah1||isoamyl acetate hydrolytic enzyme Iah1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 246

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +2

Query: 380 ESQCTSAKHQIPLNNNENEI-GPTQQFSIQMVDCLSPEMNNKDIIFREQVKTEMVLAHDE 556
           + Q T   +  P++  +N +   T+ F    +  +SP +  KDI F+ + +  ++ A + 
Sbjct: 109 DCQLTETGYMCPVDEFKNNLLALTRPFPHSKIIIVSPGICTKDICFKREQEPYVIAASET 168

Query: 557 EN 562
            N
Sbjct: 169 VN 170


>SPAC11E3.11c |||guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -3

Query: 253 YHHVNKSFVFKLFIHLYIKYVLVSFVRKTSSAY 155
           Y+H + + V   ++H YIK  ++ F  K S  +
Sbjct: 666 YNHKHPNVVSPFYVHPYIKQGILKFQSKESHKF 698


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
 Frame = -2

Query: 380 LNKYHFLWPAI*IYEMIIFFCSILHKVLL*WLD----F*QPLYPDKIS 249
           + K + LW  +  Y  + FF ++   V + W+     F   ++PD +S
Sbjct: 656 VKKLNILWEKLLEYVSVCFFINVEESVRISWISQFQLFIDEMFPDHLS 703


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,505,922
Number of Sequences: 5004
Number of extensions: 53191
Number of successful extensions: 148
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)