Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20d18
         (591 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1424 + 26982502-26983572,26984129-26984908,26988299-26990128     31   0.69 
06_03_0933 + 26067109-26067232,26067334-26067486,26068929-260692...    29   2.8  
03_01_0458 - 3521938-3522024,3522133-3522213,3522673-3522806,352...    27   8.5  

>08_02_1424 + 26982502-26983572,26984129-26984908,26988299-26990128
          Length = 1226

 Score = 31.1 bits (67), Expect = 0.69
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = +2

Query: 347 KSLAIENDIYLESQCTSAKHQIPLNNNENEIGPTQQFSIQMVDCLSPEMNNKDI 508
           K L + +D+   ++  S    +P+NNN + I  T +F +    C   EMN  +I
Sbjct: 549 KYLIVLDDLSTTTEWDSIIRNLPINNNGSRIILTTRFKLVAQHCSKKEMNMHNI 602


>06_03_0933 +
           26067109-26067232,26067334-26067486,26068929-26069279,
           26069375-26069451,26069665-26070982,26071948-26072009,
           26072253-26072309
          Length = 713

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +2

Query: 404 HQIPLNNNENEIGPTQQFSIQMVDCLSPEMNNKDIIFREQVKT 532
           +Q P+ +N   + PT QF +Q      PE+NN+ ++   Q  T
Sbjct: 460 NQFPVQSNGEFLAPTNQFPVQY-----PEVNNQPLVQMNQSST 497


>03_01_0458 - 3521938-3522024,3522133-3522213,3522673-3522806,
            3523189-3523270,3523420-3523692,3523953-3524162,
            3524252-3524337,3525197-3525289,3526003-3526227,
            3526320-3526930,3529328-3529395,3529491-3529679,
            3529773-3529901,3530013-3532484
          Length = 1579

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 452  VVWAQSHSHCY*VESGAWQMYTD 384
            V +   H HC+  E G W MY D
Sbjct: 1525 VCYYGQHYHCFAFEDGQWVMYDD 1547


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,313,942
Number of Sequences: 37544
Number of extensions: 275256
Number of successful extensions: 579
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)