Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20d18
         (591 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70858-7|AAB09177.1| 1484|Caenorhabditis elegans Hypothetical pr...    31   0.81 
Z93393-6|CAB07691.2|  495|Caenorhabditis elegans Hypothetical pr...    29   3.3  
CU457740-11|CAM36341.1|  353|Caenorhabditis elegans Hypothetical...    29   3.3  
Z81047-4|CAB02831.3|  364|Caenorhabditis elegans Hypothetical pr...    28   5.7  
AF016419-9|AAG24054.1| 2025|Caenorhabditis elegans Hypothetical ...    28   5.7  
Z73422-3|CAA97766.1|  523|Caenorhabditis elegans Hypothetical pr...    27   7.5  
AF125956-5|AAD14722.2|  353|Caenorhabditis elegans Serpentine re...    27   7.5  
Z69384-3|CAA93418.1|  475|Caenorhabditis elegans Hypothetical pr...    27   10.0 
AF016424-1|AAB65331.2|  617|Caenorhabditis elegans Hypothetical ...    27   10.0 

>U70858-7|AAB09177.1| 1484|Caenorhabditis elegans Hypothetical
           protein T01C4.1 protein.
          Length = 1484

 Score = 30.7 bits (66), Expect = 0.81
 Identities = 13/52 (25%), Positives = 29/52 (55%)
 Frame = +2

Query: 341 KFKSLAIENDIYLESQCTSAKHQIPLNNNENEIGPTQQFSIQMVDCLSPEMN 496
           K++ + +    + + QC S++   P N+N ++I      S + ++ L+PE+N
Sbjct: 389 KYEQICLGIGPFRQEQCISSRRVTPENDNCDKIMRPTGLSREQIEALNPEVN 440


>Z93393-6|CAB07691.2|  495|Caenorhabditis elegans Hypothetical
           protein Y48E1B.5 protein.
          Length = 495

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = -1

Query: 294 VMVGFLTTIISRQNIIMSTKVLFLNSLFIFTLNMSLSVLSARQVLHTF 151
           V++G L T   +QN   STK+L  NS F++ +  +L     R  L  F
Sbjct: 194 VVLGGLRTQALKQNFQFSTKILQKNSNFLWKIQKNLIFSDFRLKLKNF 241


>CU457740-11|CAM36341.1|  353|Caenorhabditis elegans Hypothetical
           protein C50E10.11 protein.
          Length = 353

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 19/57 (33%), Positives = 27/57 (47%)
 Frame = -3

Query: 565 VIFFIMSQYHFCLDLFSEYYIFVVHFRRETVNHLYTKLLCGPNLILIVIEWNLVLGR 395
           +IF          D F E+ IF+V+F  + + HL   + C P LI  V  W+  L R
Sbjct: 259 IIFVFTCVIILVFDFFPEFDIFIVYF-FDNMIHLNPLVTC-PVLIFSVSTWSKALLR 313


>Z81047-4|CAB02831.3|  364|Caenorhabditis elegans Hypothetical
           protein C41G6.6 protein.
          Length = 364

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = -3

Query: 535 FCLDLFS-EYYIFVVHFRRETVNHLYTKLLCGPNLILIVIEWNLVLGRCTLTF 380
           FC+ +   EYY ++ HF   T+   Y + +  PN  L  ++    L  CT  F
Sbjct: 185 FCISVEDVEYYTYIDHFDVVTLYANYCEPIYNPNDNLCNVKLRSTLEGCTRVF 237


>AF016419-9|AAG24054.1| 2025|Caenorhabditis elegans Hypothetical
            protein F07G11.9 protein.
          Length = 2025

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 25/115 (21%), Positives = 52/115 (45%), Gaps = 6/115 (5%)
 Frame = +2

Query: 161  RTCLADKTDKDIFNVKMNKEFK--NKTFVDMMIFCLDIMVVKNPTITTKLCAKCYR---K 325
            + C+  ++ K+  +++M  +++  N+      I    +M + NPT       K  +   K
Sbjct: 862  KICVKSQSTKNCTSIQMFNQYQSCNQVMQQNQISMRKLMDL-NPTFRCDRLQKSEQVSQK 920

Query: 326  ILSFH-KFKSLAIENDIYLESQCTSAKHQIPLNNNENEIGPTQQFSIQMVDCLSP 487
            IL  + K K + +    + + QC S++   P N+N  +I      S   ++ L+P
Sbjct: 921  ILKANCKAKPICLGTGPFKQEQCISSRRVTPENDNCEKITRLTGLSRGQIETLNP 975


>Z73422-3|CAA97766.1|  523|Caenorhabditis elegans Hypothetical
           protein B0564.4 protein.
          Length = 523

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 16/55 (29%), Positives = 31/55 (56%)
 Frame = +2

Query: 41  TNQTKKLFVLLWRVEINLGSFVLIINLIFLSKI*LIMNVCRTCLADKTDKDIFNV 205
           T+ T K FVLL+R + ++   + +  +IFL    +I  V RT +++ + +   +V
Sbjct: 11  TSHTWKFFVLLFRWKGSIWKAIYMETIIFLICYGIISVVYRTAMSEPSQRTFESV 65


>AF125956-5|AAD14722.2|  353|Caenorhabditis elegans Serpentine
           receptor, class h protein80 protein.
          Length = 353

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = -3

Query: 292 NGWIFNNHYIQTKYHHVNKSFVFKLFIHLYIKYVLVSFVRKTSSA 158
           N  + N  +I    H +  +FV  LFIH   +  ++SF  +TSSA
Sbjct: 289 NQALINLFFIHMSLHGLLSTFVI-LFIHRPYREFILSFFMQTSSA 332


>Z69384-3|CAA93418.1|  475|Caenorhabditis elegans Hypothetical
           protein T11G6.3 protein.
          Length = 475

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -3

Query: 259 TKYHHVNKSFVFKLFIHLYIKYVLVSFVRKTSS 161
           TKYH        ++FIH +I YVL+   RKT S
Sbjct: 21  TKYH-------VRVFIHTFIIYVLIHAARKTLS 46


>AF016424-1|AAB65331.2|  617|Caenorhabditis elegans Hypothetical
           protein F39G3.6 protein.
          Length = 617

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 11/42 (26%), Positives = 24/42 (57%)
 Frame = +2

Query: 2   IYNQAKFYIGYEFTNQTKKLFVLLWRVEINLGSFVLIINLIF 127
           I++QA ++  ++    +  +FV LW + + +  F L++  IF
Sbjct: 126 IHDQADYFREFQAERSSLNIFVHLWSLSVEM-QFYLLVPFIF 166


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,817,566
Number of Sequences: 27780
Number of extensions: 300125
Number of successful extensions: 778
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)