Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20d18
         (591 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   2.2  
DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    22   3.9  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    22   3.9  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    22   3.9  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    22   3.9  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    22   3.9  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    22   3.9  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   3.9  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   5.2  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   6.8  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    21   9.0  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    21   9.0  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    21   9.0  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    21   9.0  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    21   9.0  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    21   9.0  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    21   9.0  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   9.0  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   9.0  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 9/35 (25%), Positives = 20/35 (57%)
 Frame = -3

Query: 517 SEYYIFVVHFRRETVNHLYTKLLCGPNLILIVIEW 413
           +EY + +V+F  +     +   + GP ++L+V+ W
Sbjct: 198 AEYSMLLVYFHLQRHMGNFLIQVYGPCVLLVVLSW 232


>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 105 TKEPKFISTRHNKT 64
           +KEPK IS+  NKT
Sbjct: 76  SKEPKIISSLSNKT 89


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 105 TKEPKFISTRHNKT 64
           +KEPK IS+  NKT
Sbjct: 76  SKEPKIISSLSNKT 89


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 105 TKEPKFISTRHNKT 64
           +KEPK IS+  NKT
Sbjct: 76  SKEPKIISSLSNKT 89


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 105 TKEPKFISTRHNKT 64
           +KEPK IS+  NKT
Sbjct: 76  SKEPKIISSLSNKT 89


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 105 TKEPKFISTRHNKT 64
           +KEPK IS+  NKT
Sbjct: 298 SKEPKIISSLSNKT 311


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 105 TKEPKFISTRHNKT 64
           +KEPK IS+  NKT
Sbjct: 309 SKEPKIISSLSNKT 322


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 6/19 (31%), Positives = 12/19 (63%)
 Frame = -1

Query: 450 CVGPISFSLLLSGIWCLAD 394
           C G +   +L++G+W + D
Sbjct: 772 CSGLVFVQILINGVWMIID 790


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +3

Query: 288 PLQQNFVQNATEKYYHFIN 344
           PL+ +F  + TE+  H +N
Sbjct: 118 PLEPDFTSDVTERDNHLVN 136


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 176 DKTDKDIFNVKMNKEFKNKTFVD 244
           D  + D  N+K  KEF N +  D
Sbjct: 89  DDDESDNENIKSQKEFPNSSSSD 111


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 105 TKEPKFISTRHNKT 64
           ++EPK IS+  NKT
Sbjct: 76  SREPKIISSLSNKT 89


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 105 TKEPKFISTRHNKT 64
           ++EPK IS+  NKT
Sbjct: 76  SREPKIISSLSNKT 89


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 105 TKEPKFISTRHNKT 64
           ++EPK IS+  NKT
Sbjct: 76  SREPKIISSLSNKT 89


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 105 TKEPKFISTRHNKT 64
           ++EPK IS+  NKT
Sbjct: 76  SREPKIISSLSNKT 89


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 105 TKEPKFISTRHNKT 64
           ++EPK IS+  NKT
Sbjct: 76  SREPKIISSLSNKT 89


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 105 TKEPKFISTRHNKT 64
           ++EPK IS+  NKT
Sbjct: 76  SREPKIISSLSNKT 89


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 105 TKEPKFISTRHNKT 64
           ++EPK IS+  NKT
Sbjct: 76  SREPKIISSLSNKT 89


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 105 TKEPKFISTRHNKT 64
           ++EPK IS+  NKT
Sbjct: 309 SREPKIISSLSNKT 322


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 105 TKEPKFISTRHNKT 64
           ++EPK IS+  NKT
Sbjct: 309 SREPKIISSLSNKT 322



 Score = 21.0 bits (42), Expect = 9.0
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +3

Query: 300 NFVQNATEKYYHFINLNRWP 359
           N+  N  + YY+ IN+ + P
Sbjct: 346 NYNNNCKKLYYNIINIEQIP 365


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,666
Number of Sequences: 438
Number of extensions: 3642
Number of successful extensions: 21
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)