Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20d16
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch...    30   0.34 
SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase |Schizosac...    26   5.5  
SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    26   5.5  
SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase Srk1|Schizo...    25   7.3  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    25   9.6  
SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|...    25   9.6  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    25   9.6  

>SPCC126.07c |||human CTD-binding SR-like protein rA9
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 571

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 19/66 (28%), Positives = 30/66 (45%)
 Frame = +2

Query: 323 EKRGSVRGDVVESRKVEGYGKVYRFTGVVNCPARFLYEEFKNNLTKLPEWNPTILKCEII 502
           ++R S R D+V S K   Y   YR   +VN   +  Y E K +  +   +N  I +  + 
Sbjct: 477 QRRTSGRHDLVHSSKKVSYETKYRIERLVNAALKPYYREAKISKDQFALFNKNICR-SVY 535

Query: 503 KEIGDG 520
             + DG
Sbjct: 536 TALSDG 541


>SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 340

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -3

Query: 114 CNIFLHYLLQHTELHIAFGIDFFLTRTQPPYPVNG 10
           C ++ ++ +  TE  +   I+ FL    P  PVNG
Sbjct: 299 CGVYTNFTVAKTEECVLASIETFLDTGIPTNPVNG 333


>SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 624

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
 Frame = +1

Query: 547 WRGTRHNNPSRLRDPAPD--RATLPGGTRRRRQSP 645
           W GT  NNPS + + AP    A+   GT   R  P
Sbjct: 574 WNGTTVNNPSAVSNYAPTVLSASTTSGTSSVRAKP 608


>SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase
           Srk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 580

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -2

Query: 586 HEVARGYYASSPASRHLVRQV-HAI 515
           H++ R  Y S   SRH++ QV HAI
Sbjct: 220 HQIVRLTYFSEDLSRHVITQVAHAI 244


>SPAC23D3.13c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1616

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -1

Query: 179 ELLALYLNSYFNIASLCNTKG 117
           ELL   LNSY N  S+C   G
Sbjct: 515 ELLKFCLNSYVNFVSVCTLFG 535


>SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 885

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 87  QHTELHIAFGIDFFLTRTQPPYP 19
           + T L ++ G+D F TRT P  P
Sbjct: 821 ESTTLVLSTGLDVFFTRTAPSMP 843


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +2

Query: 407  VNCPARFLYEEFKNNLTKLPEWN 475
            +N P++ LY++F N+     +WN
Sbjct: 1294 MNAPSKSLYQKFVNDYLIFAKWN 1316


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,530,232
Number of Sequences: 5004
Number of extensions: 48293
Number of successful extensions: 163
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)