Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20d16
         (656 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0433 - 10178497-10178844,10180394-10180444,10181201-101812...    29   2.5  
07_03_1573 + 27829967-27830338,27830821-27831510,27831594-278317...    29   3.3  
02_04_0014 + 18916942-18917142,18917350-18917628,18917719-189181...    29   3.3  
09_04_0543 - 18442571-18443111,18443232-18443426,18443507-184440...    27   9.9  

>02_02_0433 -
           10178497-10178844,10180394-10180444,10181201-10181263,
           10181427-10181471,10181772-10181816,10183894-10183923,
           10184182-10184289,10186459-10186524,10186595-10186624,
           10187147-10187501,10189323-10189345,10191421-10191447,
           10192131-10192210,10192367-10192550
          Length = 484

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +2

Query: 437 EFKNNLTKLPEWNPTILKCEIIKE-IGDGVDLSYQVTAGGGRGIITP 574
           EF NN +    WN   L+ ++ KE +GD +   +Q+ +  G+ + +P
Sbjct: 214 EFSNNTSPREAWNHCRLRDKVRKEKLGDRITALHQLVSPFGKALSSP 260


>07_03_1573 +
           27829967-27830338,27830821-27831510,27831594-27831781,
           27832286-27832318,27832364-27832605,27833178-27833320,
           27833649-27833825,27834104-27834256,27834639-27834694,
           27834998-27835157,27835301-27835348
          Length = 753

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = +3

Query: 276 AWRTLGASSRCQTGRWRSEGPSGETSWSPGKLKATARSIDLRASSTVPP 422
           AW T+G  ++    R +S  PS  T+   G+L++  ++   +AS TV P
Sbjct: 470 AWETVGKKNKSAIMRSQSFVPSELTAIFGGQLQSCVKATGNKASVTVQP 518


>02_04_0014 +
           18916942-18917142,18917350-18917628,18917719-18918114,
           18924837-18925085
          Length = 374

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = +2

Query: 242 TIDEYKSQANESMANAW---RIITLPNWTVEKRGSVRGDVVESRKVEGY 379
           T+DEYKSQ ++ + N     R      W  +   SV G+V E +K  G+
Sbjct: 132 TVDEYKSQFDDLLYNVKLYDRTELGEVWEAKANESVMGEVAEGKKKWGF 180


>09_04_0543 -
           18442571-18443111,18443232-18443426,18443507-18444045,
           18444205-18444375,18444794-18445219
          Length = 623

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/33 (48%), Positives = 21/33 (63%)
 Frame = -2

Query: 358 LHDVSPDGPSLLHRPVWQRDDAPSVRHALVSLT 260
           L D+S + PS   RP +QRD   S+ H+LVS T
Sbjct: 51  LVDLSKEVPSQFARPAFQRD--ASLDHSLVSPT 81


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,599,742
Number of Sequences: 37544
Number of extensions: 359916
Number of successful extensions: 1322
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1322
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)