Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt20d16
(656 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U12964-4|AAA91219.3| 447|Caenorhabditis elegans Temporarily ass... 41 7e-04
Z83228-6|CAB05736.1| 241|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z75711-3|CAB00035.3| 1204|Caenorhabditis elegans Hypothetical pr... 29 3.8
L10986-3|AAA28018.1| 650|Caenorhabditis elegans Abnormal cell m... 29 3.8
L10986-2|AAK84523.2| 667|Caenorhabditis elegans Abnormal cell m... 29 3.8
L10986-1|AAR25648.1| 779|Caenorhabditis elegans Abnormal cell m... 29 3.8
U28412-6|AAC46596.2| 489|Caenorhabditis elegans Hypothetical pr... 28 6.7
Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical pr... 27 8.9
U50198-2|AAA91260.2| 363|Caenorhabditis elegans Hypothetical pr... 27 8.9
AL117204-29|CAB55138.1| 1097|Caenorhabditis elegans Hypothetical... 27 8.9
>U12964-4|AAA91219.3| 447|Caenorhabditis elegans Temporarily
assigned gene nameprotein 340 protein.
Length = 447
Score = 41.1 bits (92), Expect = 7e-04
Identities = 18/47 (38%), Positives = 30/47 (63%)
Frame = +2
Query: 467 EWNPTILKCEIIKEIGDGVDLSYQVTAGGGRGIITPRDFVILRRIAL 607
+WN +++ ++I + + DL Y V+A RG I+ RDF+ LR+I L
Sbjct: 308 KWNTQVIEGKMIAHLDNATDLYYSVSAPAMRGYISSRDFLDLRKIKL 354
>Z83228-6|CAB05736.1| 241|Caenorhabditis elegans Hypothetical
protein F52F12.7 protein.
Length = 241
Score = 29.1 bits (62), Expect = 2.9
Identities = 17/71 (23%), Positives = 34/71 (47%)
Frame = +2
Query: 272 ESMANAWRIITLPNWTVEKRGSVRGDVVESRKVEGYGKVYRFTGVVNCPARFLYEEFKNN 451
E++ N ++ W ++ + GDVV ++ +G++ + + P + +E N
Sbjct: 40 EAIFNDENYLSHAGWFKDESNN-EGDVVYAKDTP-HGRMVTISTELPMPVEDVMKETWNG 97
Query: 452 LTKLPEWNPTI 484
+ LPEWN I
Sbjct: 98 MEALPEWNQNI 108
>Z75711-3|CAB00035.3| 1204|Caenorhabditis elegans Hypothetical
protein K02B12.5 protein.
Length = 1204
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 446 NNLTKLPEWNPTILKCEIIKEIGDGVDLSYQ 538
N + K P+ P + KC++ + IGD D +Q
Sbjct: 291 NKIRKNPQMEPKLSKCQLYEAIGDLYDQYFQ 321
>L10986-3|AAA28018.1| 650|Caenorhabditis elegans Abnormal cell
migration protein10, isoform b protein.
Length = 650
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = -3
Query: 564 MPRPPPAVTWYDRSTPSPISLIISHFNIVGFHSGNFVRLFLNSS 433
+P PPPA++++ TP L+ H N +G+ +G +NS+
Sbjct: 72 LPPPPPALSYHQ--TPQQPQLLHHHNNHLGYQNGIHQITSINSA 113
>L10986-2|AAK84523.2| 667|Caenorhabditis elegans Abnormal cell
migration protein10, isoform a protein.
Length = 667
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = -3
Query: 564 MPRPPPAVTWYDRSTPSPISLIISHFNIVGFHSGNFVRLFLNSS 433
+P PPPA++++ TP L+ H N +G+ +G +NS+
Sbjct: 89 LPPPPPALSYHQ--TPQQPQLLHHHNNHLGYQNGIHQITSINSA 130
>L10986-1|AAR25648.1| 779|Caenorhabditis elegans Abnormal cell
migration protein10, isoform c protein.
Length = 779
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = -3
Query: 564 MPRPPPAVTWYDRSTPSPISLIISHFNIVGFHSGNFVRLFLNSS 433
+P PPPA++++ TP L+ H N +G+ +G +NS+
Sbjct: 201 LPPPPPALSYHQ--TPQQPQLLHHHNNHLGYQNGIHQITSINSA 242
>U28412-6|AAC46596.2| 489|Caenorhabditis elegans Hypothetical
protein T19C3.5 protein.
Length = 489
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -3
Query: 111 NIFLHYLLQHTELHIAFGIDFFLTRTQPPYPVNGF 7
N FLH L H ++ F +D+FL TQ P+ + F
Sbjct: 204 NRFLHSLPSHVDVGANFYVDYFL--TQNPHATSEF 236
>Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical
protein F28D9.1 protein.
Length = 601
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +1
Query: 559 RHNNPSRLRDPAPDRATLPGGTRRRRQSP 645
R +PS+ R PAP R P RRR+SP
Sbjct: 390 RRRSPSKSRSPAPKREIPPA---RRRRSP 415
>U50198-2|AAA91260.2| 363|Caenorhabditis elegans Hypothetical
protein R04B3.2 protein.
Length = 363
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/41 (24%), Positives = 20/41 (48%)
Frame = +3
Query: 270 TRAWRTLGASSRCQTGRWRSEGPSGETSWSPGKLKATARSI 392
T++W + + +CQ W++ P +S P K +S+
Sbjct: 149 TKSWISKWKTEKCQPNFWKNVSPDPSSSCGPYKTNPLTKSM 189
>AL117204-29|CAB55138.1| 1097|Caenorhabditis elegans Hypothetical
protein Y116A8C.36 protein.
Length = 1097
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +3
Query: 309 QTGRWRSEGPSGETSWSPGKLKATARSIDLRASSTVP 419
Q +W+ P+GE W P K+ + + S+T P
Sbjct: 825 QEMKWKGRNPAGEIGWFP---KSYVKEVGATTSTTTP 858
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,278,995
Number of Sequences: 27780
Number of extensions: 283007
Number of successful extensions: 903
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -