Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20d16
         (656 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   1.9  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    22   4.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   4.5  
DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.              22   5.9  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   7.8  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +2

Query: 401 GVVNCPARFLYEEFKNNLTKLPEWN 475
           G +NC +    E+  N L   PE+N
Sbjct: 63  GHINCDSSKFEEDLMNKLPTTPEYN 87


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -3

Query: 582 KSRGVIMPRPPP 547
           KSRGV+ P+P P
Sbjct: 30  KSRGVVGPKPVP 41


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -3

Query: 552 PPAVTWYDRSTPSPISLIISHFNIVGFHSGNFVRLFLN 439
           PP +   + S   P S ++S  N+   HSG++  +  N
Sbjct: 656 PPNLASANISQLDPYSSLLSITNLAAEHSGDYTCVAAN 693


>DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.
          Length = 132

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
 Frame = +2

Query: 401 GVVNCPARFLYEEFKNNLTKL--PEWNPTILKCEIIKE 508
           G VN    F  E+F+   TKL   + N  +  C+ I E
Sbjct: 71  GFVNADTTFNEEKFRERTTKLDSEQVNRLVNNCKDITE 108


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -1

Query: 551 RQPSPGTTGPR 519
           R P PG+ GPR
Sbjct: 56  RNPGPGSKGPR 66


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,349
Number of Sequences: 438
Number of extensions: 3898
Number of successful extensions: 31
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)