Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt20d15
(726 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X64044-1|CAA45409.1| 475|Homo sapiens splicing factor U2AF prot... 257 3e-68
BC030574-1|AAH30574.1| 471|Homo sapiens U2 small nuclear RNA au... 257 3e-68
BC008740-1|AAH08740.1| 471|Homo sapiens U2 small nuclear RNA au... 257 3e-68
BC010939-1|AAH10939.1| 306|Homo sapiens poly(A) binding protein... 41 0.004
AF026029-1|AAC39596.1| 306|Homo sapiens poly(A) binding protein... 41 0.004
BC112343-1|AAI12344.1| 508|Homo sapiens SFRS12 protein protein. 38 0.037
BC067770-1|AAH67770.1| 508|Homo sapiens splicing factor, argini... 38 0.037
BC047322-1|AAH47322.1| 386|Homo sapiens Similar to expressed se... 38 0.037
AF459094-1|AAL67778.1| 508|Homo sapiens splicing factor, argini... 38 0.037
Z95327-3|CAI42680.1| 577|Homo sapiens cleavage stimulation fact... 37 0.064
Z83819-6|CAB06072.2| 577|Homo sapiens cleavage stimulation fact... 37 0.064
M85085-1|AAA35724.1| 577|Homo sapiens cleavage stimulation fact... 37 0.064
BT009778-1|AAP88780.1| 577|Homo sapiens cleavage stimulation fa... 37 0.064
BC033135-1|AAH33135.1| 559|Homo sapiens Similar to cleavage sti... 37 0.064
BC017712-1|AAH17712.1| 577|Homo sapiens cleavage stimulation fa... 37 0.064
Y11289-1|CAA72157.1| 471|Homo sapiens p54nrb protein. 36 0.20
U89867-1|AAC51852.1| 471|Homo sapiens nuclear matrix protein 55... 36 0.20
U02493-1|AAA03427.1| 471|Homo sapiens 54 kDa protein protein. 36 0.20
L14599-1|AAC37578.1| 471|Homo sapiens protein ( Human mRNA, com... 36 0.20
CR457272-1|CAG33553.1| 357|Homo sapiens PSPC1 protein. 36 0.20
CR456761-1|CAG33042.1| 471|Homo sapiens NONO protein. 36 0.20
BC069639-1|AAH69639.1| 471|Homo sapiens non-POU domain containi... 36 0.20
BC069616-1|AAH69616.1| 471|Homo sapiens non-POU domain containi... 36 0.20
BC028299-1|AAH28299.1| 471|Homo sapiens non-POU domain containi... 36 0.20
BC014184-1|AAH14184.2| 393|Homo sapiens PSPC1 protein protein. 36 0.20
BC012141-1|AAH12141.1| 471|Homo sapiens NONO protein protein. 36 0.20
BC003129-1|AAH03129.1| 471|Homo sapiens NONO protein protein. 36 0.20
BC002364-1|AAH02364.1| 471|Homo sapiens non-POU domain containi... 36 0.20
AL354808-5|CAI41005.1| 248|Homo sapiens paraspeckle component 1... 36 0.20
AL354808-4|CAI41004.1| 523|Homo sapiens paraspeckle component 1... 36 0.20
AK001817-1|BAA91924.1| 357|Homo sapiens protein ( Homo sapiens ... 36 0.20
AF449627-1|AAL59602.1| 393|Homo sapiens paraspeckle protein 1 b... 36 0.20
AF448795-1|AAL59601.1| 523|Homo sapiens paraspeckle protein 1 a... 36 0.20
BC028239-1|AAH28239.1| 616|Homo sapiens cleavage stimulation fa... 35 0.26
AY130299-1|AAN05429.1| 616|Homo sapiens tCstF-64 protein. 35 0.26
BC070262-1|AAH70262.1| 266|Homo sapiens RNA binding motif prote... 34 0.45
BC034381-1|AAH34381.1| 266|Homo sapiens RNA binding motif prote... 34 0.45
BC029451-1|AAH29451.1| 425|Homo sapiens RNA binding motif prote... 34 0.45
AL732292-3|CAM28277.1| 408|Homo sapiens novel protein protein. 34 0.45
AL732292-2|CAI21936.1| 430|Homo sapiens RNA binding motif prote... 34 0.45
AL133418-4|CAM28326.1| 408|Homo sapiens novel protein protein. 34 0.45
AL133418-3|CAI22960.1| 430|Homo sapiens RNA binding motif prote... 34 0.45
AK002015-1|BAA92036.1| 267|Homo sapiens protein ( Homo sapiens ... 34 0.45
AF156098-1|AAD39257.1| 266|Homo sapiens RNA binding motif prote... 34 0.45
AB209753-1|BAD92990.1| 155|Homo sapiens Hypothetical protein FL... 34 0.45
X55733-1|CAA39265.1| 611|Homo sapiens initation factor 4B protein. 33 0.79
CR456958-1|CAG33239.1| 611|Homo sapiens EIF4B protein. 33 0.79
BC098437-1|AAH98437.1| 611|Homo sapiens eukaryotic translation ... 33 0.79
BC073154-1|AAH73154.1| 611|Homo sapiens eukaryotic translation ... 33 0.79
BC073139-1|AAH73139.1| 611|Homo sapiens eukaryotic translation ... 33 0.79
AK222528-1|BAD96248.1| 611|Homo sapiens eukaryotic translation ... 33 0.79
AB076839-1|BAB82380.1| 611|Homo sapiens eukaryotic initiation f... 33 0.79
AK222574-1|BAD96294.1| 616|Homo sapiens cleavage stimulation fa... 33 1.0
D26068-1|BAA05063.1| 230|Homo sapiens KIAA0038 protein. 32 2.4
BC066928-1|AAH66928.1| 228|Homo sapiens eukaryotic translation ... 32 2.4
BC021214-1|AAH21214.1| 228|Homo sapiens eukaryotic translation ... 32 2.4
BC010021-1|AAH10021.1| 228|Homo sapiens eukaryotic translation ... 32 2.4
BC006137-1|AAH06137.1| 960|Homo sapiens RBM19 protein protein. 32 2.4
BC004289-1|AAH04289.1| 960|Homo sapiens RBM19 protein protein. 32 2.4
AF045555-2|AAF75557.1| 228|Homo sapiens wbscr1 protein. 32 2.4
AF045555-1|AAC04859.2| 248|Homo sapiens wbscr1 alternative spli... 32 2.4
AC005057-2|AAS07440.1| 136|Homo sapiens unknown protein. 32 2.4
AC005057-1|AAS07439.1| 156|Homo sapiens unknown protein. 32 2.4
AB014582-1|BAA31657.2| 973|Homo sapiens KIAA0682 protein protein. 32 2.4
X70944-1|CAA50283.1| 707|Homo sapiens PTB-associated splicing f... 31 3.2
BX640912-1|CAE45953.1| 613|Homo sapiens hypothetical protein pr... 31 3.2
BC105582-1|AAI05583.1| 173|Homo sapiens RBMX2 protein protein. 31 3.2
BC051192-1|AAH51192.1| 707|Homo sapiens splicing factor proline... 31 3.2
BC033750-1|AAH33750.1| 322|Homo sapiens RNA binding motif prote... 31 3.2
BC027708-1|AAH27708.1| 525|Homo sapiens SFPQ protein protein. 31 3.2
BC004534-1|AAH04534.2| 634|Homo sapiens SFPQ protein protein. 31 3.2
BC003676-1|AAH03676.1| 163|Homo sapiens Unknown (protein for IM... 31 3.2
BC001449-1|AAH01449.1| 636|Homo sapiens HNRPR protein protein. 31 3.2
AL590434-2|CAI12467.1| 707|Homo sapiens splicing factor proline... 31 3.2
AL109936-4|CAI19027.1| 636|Homo sapiens heterogeneous nuclear r... 31 3.2
AL050405-1|CAB43745.1| 322|Homo sapiens hypothetical protein pr... 31 3.2
AL035423-8|CAI42444.1| 322|Homo sapiens RNA binding motif prote... 31 3.2
AF151837-1|AAD34074.1| 351|Homo sapiens CGI-79 protein protein. 31 3.2
D78134-1|BAA11212.1| 172|Homo sapiens CIRP protein. 31 5.6
BT007210-1|AAP35874.1| 172|Homo sapiens cold inducible RNA bind... 31 5.6
BC000901-1|AAH00901.1| 172|Homo sapiens cold inducible RNA bind... 31 5.6
BC000403-1|AAH00403.1| 172|Homo sapiens cold inducible RNA bind... 31 5.6
AL450998-10|CAH70858.1| 3664|Homo sapiens SMART/HDAC1 associated... 31 5.6
AL034555-4|CAI19526.1| 3664|Homo sapiens SMART/HDAC1 associated ... 31 5.6
AF356524-1|AAK52750.1| 3664|Homo sapiens nuclear receptor transc... 31 5.6
AF021336-1|AAC51787.1| 172|Homo sapiens DNA damage-inducible RN... 31 5.6
AC004258-1|AAC04895.1| 172|Homo sapiens CIRP protein. 31 5.6
Z95327-4|CAI42681.1| 225|Homo sapiens cleavage stimulation fact... 30 7.3
U09123-1|AAB60650.1| 341|Homo sapiens hnRNP protein A2 protein. 30 7.3
M29065-1|AAA36574.1| 341|Homo sapiens protein ( Human hnRNP A2 ... 30 7.3
M29064-1|AAA60271.1| 353|Homo sapiens SNRPB1 protein. 30 7.3
D28877-2|BAA06032.1| 341|Homo sapiens hnRNP A2 protein protein. 30 7.3
D28877-1|BAA06031.1| 353|Homo sapiens hnRNP B1 protein protein. 30 7.3
BC000506-1|AAH00506.3| 249|Homo sapiens HNRPA2B1 protein protein. 30 7.3
AM295005-1|CAL25726.1| 289|Homo sapiens boll protein protein. 30 7.3
AK093453-1|BAC04171.1| 339|Homo sapiens protein ( Homo sapiens ... 30 7.3
X67337-1|CAA47752.1| 551|Homo sapiens Human pre-mRNA cleavage f... 30 9.7
X67336-1|CAA47751.1| 551|Homo sapiens HPBRII-7 protein. 30 9.7
BC005000-1|AAH05000.1| 478|Homo sapiens CPSF6 protein protein. 30 9.7
BC000714-1|AAH00714.1| 588|Homo sapiens CPSF6 protein protein. 30 9.7
AK223568-1|BAD97288.1| 551|Homo sapiens cleavage and polyadenyl... 30 9.7
>X64044-1|CAA45409.1| 475|Homo sapiens splicing factor U2AF
protein.
Length = 475
Score = 257 bits (630), Expect = 3e-68
Identities = 126/168 (75%), Positives = 138/168 (82%), Gaps = 9/168 (5%)
Frame = +3
Query: 249 YWDVPPPGFEHITPLQYKAMQAAGQIPANIVADT--------PQAAVPVVGSTITRQARR 404
YWDVPPPGFEHITP+QYKAMQAAGQIPA + T VPVVGS +TRQARR
Sbjct: 91 YWDVPPPGFEHITPMQYKAMQAAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARR 150
Query: 405 LYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQ 584
LYVGNIPFG+TEE M+FFN QM L GL QA GNPVLA QIN DKNFAFLEFRS+DETTQ
Sbjct: 151 LYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQ 210
Query: 585 AMAFDGINFKGQSLKIRRPHDYQPMPG-TENPAINVPAGVISTVVPDS 725
AMAFDGI F+GQSLKIRRPHDYQP+PG +ENP++ VP GV+STVVPDS
Sbjct: 211 AMAFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVP-GVVSTVVPDS 257
>BC030574-1|AAH30574.1| 471|Homo sapiens U2 small nuclear RNA
auxiliary factor 2 protein.
Length = 471
Score = 257 bits (630), Expect = 3e-68
Identities = 126/168 (75%), Positives = 138/168 (82%), Gaps = 9/168 (5%)
Frame = +3
Query: 249 YWDVPPPGFEHITPLQYKAMQAAGQIPANIVADT--------PQAAVPVVGSTITRQARR 404
YWDVPPPGFEHITP+QYKAMQAAGQIPA + T VPVVGS +TRQARR
Sbjct: 91 YWDVPPPGFEHITPMQYKAMQAAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARR 150
Query: 405 LYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQ 584
LYVGNIPFG+TEE M+FFN QM L GL QA GNPVLA QIN DKNFAFLEFRS+DETTQ
Sbjct: 151 LYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQ 210
Query: 585 AMAFDGINFKGQSLKIRRPHDYQPMPG-TENPAINVPAGVISTVVPDS 725
AMAFDGI F+GQSLKIRRPHDYQP+PG +ENP++ VP GV+STVVPDS
Sbjct: 211 AMAFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVP-GVVSTVVPDS 257
>BC008740-1|AAH08740.1| 471|Homo sapiens U2 small nuclear RNA
auxiliary factor 2 protein.
Length = 471
Score = 257 bits (630), Expect = 3e-68
Identities = 126/168 (75%), Positives = 138/168 (82%), Gaps = 9/168 (5%)
Frame = +3
Query: 249 YWDVPPPGFEHITPLQYKAMQAAGQIPANIVADT--------PQAAVPVVGSTITRQARR 404
YWDVPPPGFEHITP+QYKAMQAAGQIPA + T VPVVGS +TRQARR
Sbjct: 91 YWDVPPPGFEHITPMQYKAMQAAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARR 150
Query: 405 LYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQ 584
LYVGNIPFG+TEE M+FFN QM L GL QA GNPVLA QIN DKNFAFLEFRS+DETTQ
Sbjct: 151 LYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQ 210
Query: 585 AMAFDGINFKGQSLKIRRPHDYQPMPG-TENPAINVPAGVISTVVPDS 725
AMAFDGI F+GQSLKIRRPHDYQP+PG +ENP++ VP GV+STVVPDS
Sbjct: 211 AMAFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVP-GVVSTVVPDS 257
>BC010939-1|AAH10939.1| 306|Homo sapiens poly(A) binding protein,
nuclear 1 protein.
Length = 306
Score = 41.1 bits (92), Expect = 0.004
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 4/98 (4%)
Frame = +3
Query: 351 PQAAVPVVGST---ITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLAC 521
P A PV+ S + AR +YVGN+ +G T EE + H G +L
Sbjct: 153 PGNAGPVIMSIEEKMEADARSIYVGNVDYGATAEEL------EAHFHGCGSVNRVTILCD 206
Query: 522 QIN-LDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKI 632
+ + K FA++EF + ++A D F+G+ +K+
Sbjct: 207 KFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKV 244
>AF026029-1|AAC39596.1| 306|Homo sapiens poly(A) binding protein II
protein.
Length = 306
Score = 41.1 bits (92), Expect = 0.004
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 4/98 (4%)
Frame = +3
Query: 351 PQAAVPVVGST---ITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLAC 521
P A PV+ S + AR +YVGN+ +G T EE + H G +L
Sbjct: 153 PGNAGPVIMSIEEKMEADARSIYVGNVDYGATAEEL------EAHFHGCGSVNRVTILCD 206
Query: 522 QIN-LDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKI 632
+ + K FA++EF + ++A D F+G+ +K+
Sbjct: 207 KFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKV 244
>BC112343-1|AAI12344.1| 508|Homo sapiens SFRS12 protein protein.
Length = 508
Score = 37.9 bits (84), Expect = 0.037
Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 1/101 (0%)
Frame = +3
Query: 378 STITRQARRLYVGNIPFGVTE-EETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFL 554
S I R +YVGN+ T ++ +EFF Q + + AG+ + FAF+
Sbjct: 59 SKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVK-FVRMAGDETQPTR------FAFV 111
Query: 555 EFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPMPGTENP 677
EF + +A+AF+G+ F + LKI ++ P P
Sbjct: 112 EFADQNSVPRALAFNGVMFGDRPLKINHSNNAIVKPPEMTP 152
>BC067770-1|AAH67770.1| 508|Homo sapiens splicing factor,
arginine/serine-rich 12 protein.
Length = 508
Score = 37.9 bits (84), Expect = 0.037
Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 1/101 (0%)
Frame = +3
Query: 378 STITRQARRLYVGNIPFGVTE-EETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFL 554
S I R +YVGN+ T ++ +EFF Q + + AG+ + FAF+
Sbjct: 59 SKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVK-FVRMAGDETQPTR------FAFV 111
Query: 555 EFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPMPGTENP 677
EF + +A+AF+G+ F + LKI ++ P P
Sbjct: 112 EFADQNSVPRALAFNGVMFGDRPLKINHSNNAIVKPPEMTP 152
>BC047322-1|AAH47322.1| 386|Homo sapiens Similar to expressed
sequence AI450757 protein.
Length = 386
Score = 37.9 bits (84), Expect = 0.037
Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 1/101 (0%)
Frame = +3
Query: 378 STITRQARRLYVGNIPFGVTE-EETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFL 554
S I R +YVGN+ T ++ +EFF Q + + AG+ + FAF+
Sbjct: 175 SKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVK-FVRMAGDETQPTR------FAFV 227
Query: 555 EFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPMPGTENP 677
EF + +A+AF+G+ F + LKI ++ P P
Sbjct: 228 EFADQNSVPRALAFNGVMFGDRPLKINHSNNAIVKPPEMTP 268
>AF459094-1|AAL67778.1| 508|Homo sapiens splicing factor,
arginine/serine-rich 12 protein.
Length = 508
Score = 37.9 bits (84), Expect = 0.037
Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 1/101 (0%)
Frame = +3
Query: 378 STITRQARRLYVGNIPFGVTE-EETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFL 554
S I R +YVGN+ T ++ +EFF Q + + AG+ + FAF+
Sbjct: 59 SKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVK-FVRMAGDETQPTR------FAFV 111
Query: 555 EFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPMPGTENP 677
EF + +A+AF+G+ F + LKI ++ P P
Sbjct: 112 EFADQNSVPRALAFNGVMFGDRPLKINHSNNAIVKPPEMTP 152
>Z95327-3|CAI42680.1| 577|Homo sapiens cleavage stimulation factor,
3' pre-RNA, subunit 2, 64kDa protein.
Length = 577
Score = 37.1 bits (82), Expect = 0.064
Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 6/128 (4%)
Frame = +3
Query: 357 AAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLD 536
A + V + R R ++VGNIP+ TEE+ + F++ + + V +
Sbjct: 2 AGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPV-----VSFRLVYDRETGKP 56
Query: 537 KNFAFLEFRSIDETTQAMA-FDGINFKGQSLKI-----RRPHDYQPMPGTENPAINVPAG 698
K + F E++ + AM +G F G++L++ + + GT P I P G
Sbjct: 57 KGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGTGAPVIESPYG 116
Query: 699 VISTVVPD 722
T+ P+
Sbjct: 117 --ETISPE 122
>Z83819-6|CAB06072.2| 577|Homo sapiens cleavage stimulation factor,
3' pre-RNA, subunit 2, 64kDa protein.
Length = 577
Score = 37.1 bits (82), Expect = 0.064
Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 6/128 (4%)
Frame = +3
Query: 357 AAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLD 536
A + V + R R ++VGNIP+ TEE+ + F++ + + V +
Sbjct: 2 AGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPV-----VSFRLVYDRETGKP 56
Query: 537 KNFAFLEFRSIDETTQAMA-FDGINFKGQSLKI-----RRPHDYQPMPGTENPAINVPAG 698
K + F E++ + AM +G F G++L++ + + GT P I P G
Sbjct: 57 KGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGTGAPVIESPYG 116
Query: 699 VISTVVPD 722
T+ P+
Sbjct: 117 --ETISPE 122
>M85085-1|AAA35724.1| 577|Homo sapiens cleavage stimulation factor
protein.
Length = 577
Score = 37.1 bits (82), Expect = 0.064
Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 6/128 (4%)
Frame = +3
Query: 357 AAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLD 536
A + V + R R ++VGNIP+ TEE+ + F++ + + V +
Sbjct: 2 AGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPV-----VSFRLVYDRETGKP 56
Query: 537 KNFAFLEFRSIDETTQAMA-FDGINFKGQSLKI-----RRPHDYQPMPGTENPAINVPAG 698
K + F E++ + AM +G F G++L++ + + GT P I P G
Sbjct: 57 KGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGTGAPVIESPYG 116
Query: 699 VISTVVPD 722
T+ P+
Sbjct: 117 --ETISPE 122
>BT009778-1|AAP88780.1| 577|Homo sapiens cleavage stimulation
factor, 3' pre-RNA, subunit 2, 64kDa protein.
Length = 577
Score = 37.1 bits (82), Expect = 0.064
Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 6/128 (4%)
Frame = +3
Query: 357 AAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLD 536
A + V + R R ++VGNIP+ TEE+ + F++ + + V +
Sbjct: 2 AGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPV-----VSFRLVYDRETGKP 56
Query: 537 KNFAFLEFRSIDETTQAMA-FDGINFKGQSLKI-----RRPHDYQPMPGTENPAINVPAG 698
K + F E++ + AM +G F G++L++ + + GT P I P G
Sbjct: 57 KGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGTGAPVIESPYG 116
Query: 699 VISTVVPD 722
T+ P+
Sbjct: 117 --ETISPE 122
>BC033135-1|AAH33135.1| 559|Homo sapiens Similar to cleavage
stimulation factor, 3' pre-RNA, subunit 2, 64kD protein.
Length = 559
Score = 37.1 bits (82), Expect = 0.064
Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 6/128 (4%)
Frame = +3
Query: 357 AAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLD 536
A + V + R R ++VGNIP+ TEE+ + F++ + + V +
Sbjct: 1 AGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPV-----VSFRLVYDRETGKP 55
Query: 537 KNFAFLEFRSIDETTQAMA-FDGINFKGQSLKI-----RRPHDYQPMPGTENPAINVPAG 698
K + F E++ + AM +G F G++L++ + + GT P I P G
Sbjct: 56 KGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGTGAPVIESPYG 115
Query: 699 VISTVVPD 722
T+ P+
Sbjct: 116 --ETISPE 121
>BC017712-1|AAH17712.1| 577|Homo sapiens cleavage stimulation
factor, 3' pre-RNA, subunit 2, 64kDa protein.
Length = 577
Score = 37.1 bits (82), Expect = 0.064
Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 6/128 (4%)
Frame = +3
Query: 357 AAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLD 536
A + V + R R ++VGNIP+ TEE+ + F++ + + V +
Sbjct: 2 AGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPV-----VSFRLVYDRETGKP 56
Query: 537 KNFAFLEFRSIDETTQAMA-FDGINFKGQSLKI-----RRPHDYQPMPGTENPAINVPAG 698
K + F E++ + AM +G F G++L++ + + GT P I P G
Sbjct: 57 KGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGTGAPVIESPYG 116
Query: 699 VISTVVPD 722
T+ P+
Sbjct: 117 --ETISPE 122
>Y11289-1|CAA72157.1| 471|Homo sapiens p54nrb protein.
Length = 471
Score = 35.5 bits (78), Expect = 0.20
Identities = 37/127 (29%), Positives = 55/127 (43%), Gaps = 2/127 (1%)
Frame = +3
Query: 261 PPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTE 440
PPP P+ QA+ Q + D P G Q RL+VGN+P +TE
Sbjct: 36 PPP-----PPIPANGQQASSQ-NEGLTIDLKNFRKP--GEKTFTQRSRLFVGNLPPDITE 87
Query: 441 EETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAF--LEFRSIDETTQAMAFDGINFK 614
EE + F + AG I+ DK F F LE R++ E + + D + +
Sbjct: 88 EEMRKLFEKY-------GKAGEVF----IHKDKGFGFIRLETRTLAEIAK-VELDNMPLR 135
Query: 615 GQSLKIR 635
G+ L++R
Sbjct: 136 GKQLRVR 142
>U89867-1|AAC51852.1| 471|Homo sapiens nuclear matrix protein 55
protein.
Length = 471
Score = 35.5 bits (78), Expect = 0.20
Identities = 37/127 (29%), Positives = 55/127 (43%), Gaps = 2/127 (1%)
Frame = +3
Query: 261 PPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTE 440
PPP P+ QA+ Q + D P G Q RL+VGN+P +TE
Sbjct: 36 PPP-----PPIPANGQQASSQ-NEGLTIDLKNFRKP--GEKTFTQRSRLFVGNLPPDITE 87
Query: 441 EETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAF--LEFRSIDETTQAMAFDGINFK 614
EE + F + AG I+ DK F F LE R++ E + + D + +
Sbjct: 88 EEMRKLFEKY-------GKAGEVF----IHKDKGFGFIRLETRTLAEIAK-VELDNMPLR 135
Query: 615 GQSLKIR 635
G+ L++R
Sbjct: 136 GKQLRVR 142
>U02493-1|AAA03427.1| 471|Homo sapiens 54 kDa protein protein.
Length = 471
Score = 35.5 bits (78), Expect = 0.20
Identities = 37/127 (29%), Positives = 55/127 (43%), Gaps = 2/127 (1%)
Frame = +3
Query: 261 PPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTE 440
PPP P+ QA+ Q + D P G Q RL+VGN+P +TE
Sbjct: 36 PPP-----PPIPANGQQASSQ-NEGLTIDLKNFRKP--GEKTFTQRSRLFVGNLPPDITE 87
Query: 441 EETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAF--LEFRSIDETTQAMAFDGINFK 614
EE + F + AG I+ DK F F LE R++ E + + D + +
Sbjct: 88 EEMRKLFEKY-------GKAGEVF----IHKDKGFGFIRLETRTLAEIAK-VELDNMPLR 135
Query: 615 GQSLKIR 635
G+ L++R
Sbjct: 136 GKQLRVR 142
>L14599-1|AAC37578.1| 471|Homo sapiens protein ( Human mRNA,
complete cds. ).
Length = 471
Score = 35.5 bits (78), Expect = 0.20
Identities = 37/127 (29%), Positives = 55/127 (43%), Gaps = 2/127 (1%)
Frame = +3
Query: 261 PPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTE 440
PPP P+ QA+ Q + D P G Q RL+VGN+P +TE
Sbjct: 36 PPP-----PPIPANGQQASSQ-NEGLTIDLKNFRKP--GEKTFTQRSRLFVGNLPPDITE 87
Query: 441 EETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAF--LEFRSIDETTQAMAFDGINFK 614
EE + F + AG I+ DK F F LE R++ E + + D + +
Sbjct: 88 EEMRKLFEKY-------GKAGEVF----IHKDKGFGFIRLETRTLAEIAK-VELDNMPLR 135
Query: 615 GQSLKIR 635
G+ L++R
Sbjct: 136 GKQLRVR 142
>CR457272-1|CAG33553.1| 357|Homo sapiens PSPC1 protein.
Length = 357
Score = 35.5 bits (78), Expect = 0.20
Identities = 30/89 (33%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Frame = +3
Query: 375 GSTITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAF- 551
G Q RL+VGN+P +TEE+ F + G P IN D+ F F
Sbjct: 38 GEKTYTQRCRLFVGNLPTDITEEDFKRLFERY----------GEP-SEVFINRDRGFGFI 86
Query: 552 -LEFRSIDETTQAMAFDGINFKGQSLKIR 635
LE R++ E +A DG K + L+IR
Sbjct: 87 RLESRTLAEIAKA-ELDGTILKSRPLRIR 114
>CR456761-1|CAG33042.1| 471|Homo sapiens NONO protein.
Length = 471
Score = 35.5 bits (78), Expect = 0.20
Identities = 37/127 (29%), Positives = 55/127 (43%), Gaps = 2/127 (1%)
Frame = +3
Query: 261 PPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTE 440
PPP P+ QA+ Q + D P G Q RL+VGN+P +TE
Sbjct: 36 PPP-----PPIPANGQQASSQ-NEGLTIDLKNFRKP--GEKTFTQRSRLFVGNLPPDITE 87
Query: 441 EETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAF--LEFRSIDETTQAMAFDGINFK 614
EE + F + AG I+ DK F F LE R++ E + + D + +
Sbjct: 88 EEMRKLFEKY-------GKAGEVF----IHKDKGFGFIRLETRTLAEIAK-VELDNMPLR 135
Query: 615 GQSLKIR 635
G+ L++R
Sbjct: 136 GKQLRVR 142
>BC069639-1|AAH69639.1| 471|Homo sapiens non-POU domain containing,
octamer-binding protein.
Length = 471
Score = 35.5 bits (78), Expect = 0.20
Identities = 37/127 (29%), Positives = 55/127 (43%), Gaps = 2/127 (1%)
Frame = +3
Query: 261 PPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTE 440
PPP P+ QA+ Q + D P G Q RL+VGN+P +TE
Sbjct: 36 PPP-----PPIPANGQQASSQ-NEGLTIDLKNFRKP--GEKTFTQRSRLFVGNLPPDITE 87
Query: 441 EETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAF--LEFRSIDETTQAMAFDGINFK 614
EE + F + AG I+ DK F F LE R++ E + + D + +
Sbjct: 88 EEMRKLFEKY-------GKAGEVF----IHKDKGFGFIRLETRTLAEIAK-VELDNMPLR 135
Query: 615 GQSLKIR 635
G+ L++R
Sbjct: 136 GKQLRVR 142
>BC069616-1|AAH69616.1| 471|Homo sapiens non-POU domain containing,
octamer-binding protein.
Length = 471
Score = 35.5 bits (78), Expect = 0.20
Identities = 37/127 (29%), Positives = 55/127 (43%), Gaps = 2/127 (1%)
Frame = +3
Query: 261 PPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTE 440
PPP P+ QA+ Q + D P G Q RL+VGN+P +TE
Sbjct: 36 PPP-----PPIPANGQQASSQ-NEGLTIDLKNFRKP--GEKTFTQRSRLFVGNLPPDITE 87
Query: 441 EETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAF--LEFRSIDETTQAMAFDGINFK 614
EE + F + AG I+ DK F F LE R++ E + + D + +
Sbjct: 88 EEMRKLFEKY-------GKAGEVF----IHKDKGFGFIRLETRTLAEIAK-VELDNMPLR 135
Query: 615 GQSLKIR 635
G+ L++R
Sbjct: 136 GKQLRVR 142
>BC028299-1|AAH28299.1| 471|Homo sapiens non-POU domain containing,
octamer-binding protein.
Length = 471
Score = 35.5 bits (78), Expect = 0.20
Identities = 37/127 (29%), Positives = 55/127 (43%), Gaps = 2/127 (1%)
Frame = +3
Query: 261 PPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTE 440
PPP P+ QA+ Q + D P G Q RL+VGN+P +TE
Sbjct: 36 PPP-----PPIPANGQQASSQ-NEGLTIDLKNFRKP--GEKTFTQRSRLFVGNLPPDITE 87
Query: 441 EETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAF--LEFRSIDETTQAMAFDGINFK 614
EE + F + AG I+ DK F F LE R++ E + + D + +
Sbjct: 88 EEMRKLFEKY-------GKAGEVF----IHKDKGFGFIRLETRTLAEIAK-VELDNMPLR 135
Query: 615 GQSLKIR 635
G+ L++R
Sbjct: 136 GKQLRVR 142
>BC014184-1|AAH14184.2| 393|Homo sapiens PSPC1 protein protein.
Length = 393
Score = 35.5 bits (78), Expect = 0.20
Identities = 30/89 (33%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Frame = +3
Query: 375 GSTITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAF- 551
G Q RL+VGN+P +TEE+ F + G P IN D+ F F
Sbjct: 74 GEKTYTQRCRLFVGNLPTDITEEDFKRLFERY----------GEP-SEVFINRDRGFGFI 122
Query: 552 -LEFRSIDETTQAMAFDGINFKGQSLKIR 635
LE R++ E +A DG K + L+IR
Sbjct: 123 RLESRTLAEIAKA-ELDGTILKSRPLRIR 150
>BC012141-1|AAH12141.1| 471|Homo sapiens NONO protein protein.
Length = 471
Score = 35.5 bits (78), Expect = 0.20
Identities = 37/127 (29%), Positives = 55/127 (43%), Gaps = 2/127 (1%)
Frame = +3
Query: 261 PPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTE 440
PPP P+ QA+ Q + D P G Q RL+VGN+P +TE
Sbjct: 36 PPP-----PPIPANGQQASSQ-NEGLTIDLKNFRKP--GEKTFTQRSRLFVGNLPPDITE 87
Query: 441 EETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAF--LEFRSIDETTQAMAFDGINFK 614
EE + F + AG I+ DK F F LE R++ E + + D + +
Sbjct: 88 EEMRKLFEKY-------GKAGEVF----IHKDKGFGFIRLETRTLAEIAK-VELDNMPLR 135
Query: 615 GQSLKIR 635
G+ L++R
Sbjct: 136 GKQLRVR 142
>BC003129-1|AAH03129.1| 471|Homo sapiens NONO protein protein.
Length = 471
Score = 35.5 bits (78), Expect = 0.20
Identities = 37/127 (29%), Positives = 55/127 (43%), Gaps = 2/127 (1%)
Frame = +3
Query: 261 PPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTE 440
PPP P+ QA+ Q + D P G Q RL+VGN+P +TE
Sbjct: 36 PPP-----PPIPANGQQASSQ-NEGLTIDLKNFRKP--GEKTFTQRSRLFVGNLPPDITE 87
Query: 441 EETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAF--LEFRSIDETTQAMAFDGINFK 614
EE + F + AG I+ DK F F LE R++ E + + D + +
Sbjct: 88 EEMRKLFEKY-------GKAGEVF----IHKDKGFGFIRLETRTLAEIAK-VELDNMPLR 135
Query: 615 GQSLKIR 635
G+ L++R
Sbjct: 136 GKQLRVR 142
>BC002364-1|AAH02364.1| 471|Homo sapiens non-POU domain containing,
octamer-binding protein.
Length = 471
Score = 35.5 bits (78), Expect = 0.20
Identities = 37/127 (29%), Positives = 55/127 (43%), Gaps = 2/127 (1%)
Frame = +3
Query: 261 PPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTE 440
PPP P+ QA+ Q + D P G Q RL+VGN+P +TE
Sbjct: 36 PPP-----PPIPANGQQASSQ-NEGLTIDLKNFRKP--GEKTFTQRSRLFVGNLPPDITE 87
Query: 441 EETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAF--LEFRSIDETTQAMAFDGINFK 614
EE + F + AG I+ DK F F LE R++ E + + D + +
Sbjct: 88 EEMRKLFEKY-------GKAGEVF----IHKDKGFGFIRLETRTLAEIAK-VELDNMPLR 135
Query: 615 GQSLKIR 635
G+ L++R
Sbjct: 136 GKQLRVR 142
>AL354808-5|CAI41005.1| 248|Homo sapiens paraspeckle component 1
protein.
Length = 248
Score = 35.5 bits (78), Expect = 0.20
Identities = 30/89 (33%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Frame = +3
Query: 375 GSTITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAF- 551
G Q RL+VGN+P +TEE+ F + G P IN D+ F F
Sbjct: 74 GEKTYTQRCRLFVGNLPTDITEEDFKRLFERY----------GEP-SEVFINRDRGFGFI 122
Query: 552 -LEFRSIDETTQAMAFDGINFKGQSLKIR 635
LE R++ E +A DG K + L+IR
Sbjct: 123 RLESRTLAEIAKA-ELDGTILKSRPLRIR 150
>AL354808-4|CAI41004.1| 523|Homo sapiens paraspeckle component 1
protein.
Length = 523
Score = 35.5 bits (78), Expect = 0.20
Identities = 30/89 (33%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Frame = +3
Query: 375 GSTITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAF- 551
G Q RL+VGN+P +TEE+ F + G P IN D+ F F
Sbjct: 74 GEKTYTQRCRLFVGNLPTDITEEDFKRLFERY----------GEP-SEVFINRDRGFGFI 122
Query: 552 -LEFRSIDETTQAMAFDGINFKGQSLKIR 635
LE R++ E +A DG K + L+IR
Sbjct: 123 RLESRTLAEIAKA-ELDGTILKSRPLRIR 150
>AK001817-1|BAA91924.1| 357|Homo sapiens protein ( Homo sapiens
cDNA FLJ10955 fis, clone PLACE1000406, moderately
similar to PTB-ASSOCIATED SPLICING FACTOR. ).
Length = 357
Score = 35.5 bits (78), Expect = 0.20
Identities = 30/89 (33%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Frame = +3
Query: 375 GSTITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAF- 551
G Q RL+VGN+P +TEE+ F + G P IN D+ F F
Sbjct: 38 GEKTYTQRCRLFVGNLPTDITEEDFKRLFERY----------GEP-SEVFINRDRGFGFI 86
Query: 552 -LEFRSIDETTQAMAFDGINFKGQSLKIR 635
LE R++ E +A DG K + L+IR
Sbjct: 87 RLESRTLAEIAKA-ELDGTILKSRPLRIR 114
>AF449627-1|AAL59602.1| 393|Homo sapiens paraspeckle protein 1 beta
isoform protein.
Length = 393
Score = 35.5 bits (78), Expect = 0.20
Identities = 30/89 (33%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Frame = +3
Query: 375 GSTITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAF- 551
G Q RL+VGN+P +TEE+ F + G P IN D+ F F
Sbjct: 74 GEKTYTQRCRLFVGNLPTDITEEDFKRLFERY----------GEP-SEVFINRDRGFGFI 122
Query: 552 -LEFRSIDETTQAMAFDGINFKGQSLKIR 635
LE R++ E +A DG K + L+IR
Sbjct: 123 RLESRTLAEIAKA-ELDGTILKSRPLRIR 150
>AF448795-1|AAL59601.1| 523|Homo sapiens paraspeckle protein 1
alpha isoform protein.
Length = 523
Score = 35.5 bits (78), Expect = 0.20
Identities = 30/89 (33%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Frame = +3
Query: 375 GSTITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAF- 551
G Q RL+VGN+P +TEE+ F + G P IN D+ F F
Sbjct: 74 GEKTYTQRCRLFVGNLPTDITEEDFKRLFERY----------GEP-SEVFINRDRGFGFI 122
Query: 552 -LEFRSIDETTQAMAFDGINFKGQSLKIR 635
LE R++ E +A DG K + L+IR
Sbjct: 123 RLESRTLAEIAKA-ELDGTILKSRPLRIR 150
>BC028239-1|AAH28239.1| 616|Homo sapiens cleavage stimulation
factor, 3' pre-RNA, subunit 2, 64kDa, tau variant
protein.
Length = 616
Score = 35.1 bits (77), Expect = 0.26
Identities = 22/93 (23%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Frame = +3
Query: 357 AAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLD 536
+++ V + R R ++VGNIP+ TEE+ + F++ + + V +
Sbjct: 2 SSLAVRDPAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSV-----VSFRLVYDRETGKP 56
Query: 537 KNFAFLEFRSIDETTQAMA-FDGINFKGQSLKI 632
K + F E++ + AM +G F G++L++
Sbjct: 57 KGYGFCEYQDQETALSAMRNLNGREFSGRALRV 89
>AY130299-1|AAN05429.1| 616|Homo sapiens tCstF-64 protein.
Length = 616
Score = 35.1 bits (77), Expect = 0.26
Identities = 22/93 (23%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Frame = +3
Query: 357 AAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLD 536
+++ V + R R ++VGNIP+ TEE+ + F++ + + V +
Sbjct: 2 SSLAVRDPAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSV-----VSFRLVYDRETGKP 56
Query: 537 KNFAFLEFRSIDETTQAMA-FDGINFKGQSLKI 632
K + F E++ + AM +G F G++L++
Sbjct: 57 KGYGFCEYQDQETALSAMRNLNGREFSGRALRV 89
>BC070262-1|AAH70262.1| 266|Homo sapiens RNA binding motif protein
7 protein.
Length = 266
Score = 34.3 bits (75), Expect = 0.45
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
Frame = +3
Query: 372 VGSTITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKN--- 542
+G+ R L+VGN+ VTEE E F+Q AG PV+ +I DK+
Sbjct: 1 MGAAAAEADRTLFVGNLETKVTEELLFELFHQ----------AG-PVIKVKIPKDKDGKP 49
Query: 543 --FAFLEFRSIDETTQAM-AFDGINFKGQSLKIR 635
FAF+ F+ AM +GI G+ +KI+
Sbjct: 50 KQFAFVNFKHEVSVPYAMNLLNGIRLYGRPIKIQ 83
>BC034381-1|AAH34381.1| 266|Homo sapiens RNA binding motif protein
7 protein.
Length = 266
Score = 34.3 bits (75), Expect = 0.45
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
Frame = +3
Query: 372 VGSTITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKN--- 542
+G+ R L+VGN+ VTEE E F+Q AG PV+ +I DK+
Sbjct: 1 MGAAAAEADRTLFVGNLETKVTEELLFELFHQ----------AG-PVIKVKIPKDKDGKP 49
Query: 543 --FAFLEFRSIDETTQAM-AFDGINFKGQSLKIR 635
FAF+ F+ AM +GI G+ +KI+
Sbjct: 50 KQFAFVNFKHEVSVPYAMNLLNGIKLYGRPIKIQ 83
>BC029451-1|AAH29451.1| 425|Homo sapiens RNA binding motif protein
34 protein.
Length = 425
Score = 34.3 bits (75), Expect = 0.45
Identities = 24/100 (24%), Positives = 43/100 (43%)
Frame = +3
Query: 339 VADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLA 518
+AD + V + T +R R ++VGN+P+ V E + F L + A V
Sbjct: 262 IADGFRIRVDLASETSSRDKRSVFVGNLPYKVEESAIEKHF-----LDCGSIMAVRIVRD 316
Query: 519 CQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRR 638
+ K F ++ F + D A+ + G+ L++ R
Sbjct: 317 KMTGIGKGFGYVLFENTDSVHLALKLNNSELMGRKLRVMR 356
>AL732292-3|CAM28277.1| 408|Homo sapiens novel protein protein.
Length = 408
Score = 34.3 bits (75), Expect = 0.45
Identities = 24/100 (24%), Positives = 43/100 (43%)
Frame = +3
Query: 339 VADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLA 518
+AD + V + T +R R ++VGN+P+ V E + F L + A V
Sbjct: 245 IADGFRIRVDLASETSSRDKRSVFVGNLPYKVEESAIEKHF-----LDCGSIMAVRIVRD 299
Query: 519 CQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRR 638
+ K F ++ F + D A+ + G+ L++ R
Sbjct: 300 KMTGIGKGFGYVLFENTDSVHLALKLNNSELMGRKLRVMR 339
>AL732292-2|CAI21936.1| 430|Homo sapiens RNA binding motif protein
34 protein.
Length = 430
Score = 34.3 bits (75), Expect = 0.45
Identities = 24/100 (24%), Positives = 43/100 (43%)
Frame = +3
Query: 339 VADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLA 518
+AD + V + T +R R ++VGN+P+ V E + F L + A V
Sbjct: 267 IADGFRIRVDLASETSSRDKRSVFVGNLPYKVEESAIEKHF-----LDCGSIMAVRIVRD 321
Query: 519 CQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRR 638
+ K F ++ F + D A+ + G+ L++ R
Sbjct: 322 KMTGIGKGFGYVLFENTDSVHLALKLNNSELMGRKLRVMR 361
>AL133418-4|CAM28326.1| 408|Homo sapiens novel protein protein.
Length = 408
Score = 34.3 bits (75), Expect = 0.45
Identities = 24/100 (24%), Positives = 43/100 (43%)
Frame = +3
Query: 339 VADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLA 518
+AD + V + T +R R ++VGN+P+ V E + F L + A V
Sbjct: 245 IADGFRIRVDLASETSSRDKRSVFVGNLPYKVEESAIEKHF-----LDCGSIMAVRIVRD 299
Query: 519 CQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRR 638
+ K F ++ F + D A+ + G+ L++ R
Sbjct: 300 KMTGIGKGFGYVLFENTDSVHLALKLNNSELMGRKLRVMR 339
>AL133418-3|CAI22960.1| 430|Homo sapiens RNA binding motif protein
34 protein.
Length = 430
Score = 34.3 bits (75), Expect = 0.45
Identities = 24/100 (24%), Positives = 43/100 (43%)
Frame = +3
Query: 339 VADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLA 518
+AD + V + T +R R ++VGN+P+ V E + F L + A V
Sbjct: 267 IADGFRIRVDLASETSSRDKRSVFVGNLPYKVEESAIEKHF-----LDCGSIMAVRIVRD 321
Query: 519 CQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRR 638
+ K F ++ F + D A+ + G+ L++ R
Sbjct: 322 KMTGIGKGFGYVLFENTDSVHLALKLNNSELMGRKLRVMR 361
>AK002015-1|BAA92036.1| 267|Homo sapiens protein ( Homo sapiens
cDNA FLJ11153 fis, clone PLACE1006917, weakly similar to
HSH49 PROTEIN. ).
Length = 267
Score = 34.3 bits (75), Expect = 0.45
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
Frame = +3
Query: 372 VGSTITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKN--- 542
+G+ R L+VGN+ VTEE E F+Q AG PV+ +I DK+
Sbjct: 1 MGAAAAEADRTLFVGNLETKVTEELLFELFHQ----------AG-PVIKVKIPKDKDGKP 49
Query: 543 --FAFLEFRSIDETTQAM-AFDGINFKGQSLKIR 635
FAF+ F+ AM +GI G+ +KI+
Sbjct: 50 KQFAFVNFKHEVSVPYAMNLLNGIKLYGRPIKIQ 83
>AF156098-1|AAD39257.1| 266|Homo sapiens RNA binding motif protein
7 protein.
Length = 266
Score = 34.3 bits (75), Expect = 0.45
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
Frame = +3
Query: 372 VGSTITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKN--- 542
+G+ R L+VGN+ VTEE E F+Q AG PV+ +I DK+
Sbjct: 1 MGAAAAEADRTLFVGNLETKVTEELLFELFHQ----------AG-PVIKVKIPKDKDGKP 49
Query: 543 --FAFLEFRSIDETTQAM-AFDGINFKGQSLKIR 635
FAF+ F+ AM +GI G+ +KI+
Sbjct: 50 KQFAFVNFKHEVSVPYAMNLLNGIKLYGRPIKIQ 83
>AB209753-1|BAD92990.1| 155|Homo sapiens Hypothetical protein
FLJ11153 variant protein.
Length = 155
Score = 34.3 bits (75), Expect = 0.45
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
Frame = +3
Query: 372 VGSTITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKN--- 542
+G+ R L+VGN+ VTEE E F+Q AG PV+ +I DK+
Sbjct: 7 MGAAAAEADRTLFVGNLETKVTEELLFELFHQ----------AG-PVIKVKIPKDKDGKP 55
Query: 543 --FAFLEFRSIDETTQAM-AFDGINFKGQSLKIR 635
FAF+ F+ AM +GI G+ +KI+
Sbjct: 56 KQFAFVNFKHEVSVPYAMNLLNGIKLYGRPIKIQ 89
>X55733-1|CAA39265.1| 611|Homo sapiens initation factor 4B protein.
Length = 611
Score = 33.5 bits (73), Expect = 0.79
Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Frame = +3
Query: 408 YVGNIPFGVTEEETMEFFNQQMHLSG--LAQAAGNPVLACQINLDKNFAFLEFRSIDETT 581
++GN+P+ VTEE EFF + +++S L + NP K F + EF +D
Sbjct: 99 FLGNLPYDVTEESIKEFF-RGLNISAVRLPREPSNPERL------KGFGYAEFEDLDSLL 151
Query: 582 QAMAFDGINFKGQSLKI 632
A++ + + + +++
Sbjct: 152 SALSLNEESLGNRRIRV 168
>CR456958-1|CAG33239.1| 611|Homo sapiens EIF4B protein.
Length = 611
Score = 33.5 bits (73), Expect = 0.79
Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Frame = +3
Query: 408 YVGNIPFGVTEEETMEFFNQQMHLSG--LAQAAGNPVLACQINLDKNFAFLEFRSIDETT 581
++GN+P+ VTEE EFF + +++S L + NP K F + EF +D
Sbjct: 99 FLGNLPYDVTEESIKEFF-RGLNISAVRLPREPSNPERL------KGFGYAEFEDLDSLL 151
Query: 582 QAMAFDGINFKGQSLKI 632
A++ + + + +++
Sbjct: 152 SALSLNEESLGNRRIRV 168
>BC098437-1|AAH98437.1| 611|Homo sapiens eukaryotic translation
initiation factor 4B protein.
Length = 611
Score = 33.5 bits (73), Expect = 0.79
Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Frame = +3
Query: 408 YVGNIPFGVTEEETMEFFNQQMHLSG--LAQAAGNPVLACQINLDKNFAFLEFRSIDETT 581
++GN+P+ VTEE EFF + +++S L + NP K F + EF +D
Sbjct: 99 FLGNLPYDVTEESIKEFF-RGLNISAVRLPREPSNPERL------KGFGYAEFEDLDSLL 151
Query: 582 QAMAFDGINFKGQSLKI 632
A++ + + + +++
Sbjct: 152 SALSLNEESLGNRRIRV 168
>BC073154-1|AAH73154.1| 611|Homo sapiens eukaryotic translation
initiation factor 4B protein.
Length = 611
Score = 33.5 bits (73), Expect = 0.79
Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Frame = +3
Query: 408 YVGNIPFGVTEEETMEFFNQQMHLSG--LAQAAGNPVLACQINLDKNFAFLEFRSIDETT 581
++GN+P+ VTEE EFF + +++S L + NP K F + EF +D
Sbjct: 99 FLGNLPYDVTEESIKEFF-RGLNISAVRLPREPSNPERL------KGFGYAEFEDLDSLL 151
Query: 582 QAMAFDGINFKGQSLKI 632
A++ + + + +++
Sbjct: 152 SALSLNEESLGNRRIRV 168
>BC073139-1|AAH73139.1| 611|Homo sapiens eukaryotic translation
initiation factor 4B protein.
Length = 611
Score = 33.5 bits (73), Expect = 0.79
Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Frame = +3
Query: 408 YVGNIPFGVTEEETMEFFNQQMHLSG--LAQAAGNPVLACQINLDKNFAFLEFRSIDETT 581
++GN+P+ VTEE EFF + +++S L + NP K F + EF +D
Sbjct: 99 FLGNLPYDVTEESIKEFF-RGLNISAVRLPREPSNPERL------KGFGYAEFEDLDSLL 151
Query: 582 QAMAFDGINFKGQSLKI 632
A++ + + + +++
Sbjct: 152 SALSLNEESLGNRRIRV 168
>AK222528-1|BAD96248.1| 611|Homo sapiens eukaryotic translation
initiation factor 4B variant protein.
Length = 611
Score = 33.5 bits (73), Expect = 0.79
Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Frame = +3
Query: 408 YVGNIPFGVTEEETMEFFNQQMHLSG--LAQAAGNPVLACQINLDKNFAFLEFRSIDETT 581
++GN+P+ VTEE EFF + +++S L + NP K F + EF +D
Sbjct: 99 FLGNLPYDVTEESIKEFF-RGLNISAVRLPREPSNPERL------KGFGYAEFEDLDSLL 151
Query: 582 QAMAFDGINFKGQSLKI 632
A++ + + + +++
Sbjct: 152 SALSLNEESLGNKRIRV 168
>AB076839-1|BAB82380.1| 611|Homo sapiens eukaryotic initiation
factor 4B protein.
Length = 611
Score = 33.5 bits (73), Expect = 0.79
Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Frame = +3
Query: 408 YVGNIPFGVTEEETMEFFNQQMHLSG--LAQAAGNPVLACQINLDKNFAFLEFRSIDETT 581
++GN+P+ VTEE EFF + +++S L + NP K F + EF +D
Sbjct: 99 FLGNLPYDVTEESIKEFF-RGLNISAVRLPREPSNPERL------KGFGYAEFEDLDSLL 151
Query: 582 QAMAFDGINFKGQSLKI 632
A++ + + + +++
Sbjct: 152 SALSLNEESLGNRRIRV 168
>AK222574-1|BAD96294.1| 616|Homo sapiens cleavage stimulation
factor, 3' pre-RNA, subunit 2, 64kDa, tau variant
variant protein.
Length = 616
Score = 33.1 bits (72), Expect = 1.0
Identities = 21/93 (22%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Frame = +3
Query: 357 AAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLD 536
+++ V + R R ++VG+IP+ TEE+ + F++ + + V +
Sbjct: 2 SSLAVRDPAMDRSLRSVFVGSIPYEATEEQLKDIFSEVGSV-----VSFRLVYDRETGKP 56
Query: 537 KNFAFLEFRSIDETTQAMA-FDGINFKGQSLKI 632
K + F E++ + AM +G F G++L++
Sbjct: 57 KGYGFCEYQDQETALSAMRNLNGREFSGRALRV 89
>D26068-1|BAA05063.1| 230|Homo sapiens KIAA0038 protein.
Length = 230
Score = 31.9 bits (69), Expect = 2.4
Identities = 19/75 (25%), Positives = 34/75 (45%)
Frame = +3
Query: 408 YVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQA 587
YVGN+PF + + F L+ + V + K F ++EF +D +A
Sbjct: 47 YVGNLPFNTVQGDIDAIFKD------LSIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEA 100
Query: 588 MAFDGINFKGQSLKI 632
+ +DG +SL++
Sbjct: 101 LTYDGALLGDRSLRV 115
>BC066928-1|AAH66928.1| 228|Homo sapiens eukaryotic translation
initiation factor 4H protein.
Length = 228
Score = 31.9 bits (69), Expect = 2.4
Identities = 19/75 (25%), Positives = 34/75 (45%)
Frame = +3
Query: 408 YVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQA 587
YVGN+PF + + F L+ + V + K F ++EF +D +A
Sbjct: 45 YVGNLPFNTVQGDIDAIFKD------LSIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEA 98
Query: 588 MAFDGINFKGQSLKI 632
+ +DG +SL++
Sbjct: 99 LTYDGALLGDRSLRV 113
>BC021214-1|AAH21214.1| 228|Homo sapiens eukaryotic translation
initiation factor 4H protein.
Length = 228
Score = 31.9 bits (69), Expect = 2.4
Identities = 19/75 (25%), Positives = 34/75 (45%)
Frame = +3
Query: 408 YVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQA 587
YVGN+PF + + F L+ + V + K F ++EF +D +A
Sbjct: 45 YVGNLPFNTVQGDIDAIFKD------LSIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEA 98
Query: 588 MAFDGINFKGQSLKI 632
+ +DG +SL++
Sbjct: 99 LTYDGALLGDRSLRV 113
>BC010021-1|AAH10021.1| 228|Homo sapiens eukaryotic translation
initiation factor 4H protein.
Length = 228
Score = 31.9 bits (69), Expect = 2.4
Identities = 19/75 (25%), Positives = 34/75 (45%)
Frame = +3
Query: 408 YVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQA 587
YVGN+PF + + F L+ + V + K F ++EF +D +A
Sbjct: 45 YVGNLPFNTVQGDIDAIFKD------LSIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEA 98
Query: 588 MAFDGINFKGQSLKI 632
+ +DG +SL++
Sbjct: 99 LTYDGALLGDRSLRV 113
>BC006137-1|AAH06137.1| 960|Homo sapiens RBM19 protein protein.
Length = 960
Score = 31.9 bits (69), Expect = 2.4
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Frame = +3
Query: 393 QARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSID 572
++ RL+V N+P+ TEE+ + F++ LS L P+ + K FAF+ F +
Sbjct: 400 ESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHY----PIDSL-TKKPKGFAFITFMFPE 454
Query: 573 ETTQAMA-FDGINFKGQSLKI 632
+A + DG F+G+ L +
Sbjct: 455 HAVKAYSEVDGQVFQGRMLHV 475
>BC004289-1|AAH04289.1| 960|Homo sapiens RBM19 protein protein.
Length = 960
Score = 31.9 bits (69), Expect = 2.4
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Frame = +3
Query: 393 QARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSID 572
++ RL+V N+P+ TEE+ + F++ LS L P+ + K FAF+ F +
Sbjct: 400 ESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHY----PIDSL-TKKPKGFAFITFMFPE 454
Query: 573 ETTQAMA-FDGINFKGQSLKI 632
+A + DG F+G+ L +
Sbjct: 455 HAVKAYSEVDGQVFQGRMLHV 475
>AF045555-2|AAF75557.1| 228|Homo sapiens wbscr1 protein.
Length = 228
Score = 31.9 bits (69), Expect = 2.4
Identities = 19/75 (25%), Positives = 34/75 (45%)
Frame = +3
Query: 408 YVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQA 587
YVGN+PF + + F L+ + V + K F ++EF +D +A
Sbjct: 45 YVGNLPFNTVQGDIDAIFKD------LSIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEA 98
Query: 588 MAFDGINFKGQSLKI 632
+ +DG +SL++
Sbjct: 99 LTYDGALLGDRSLRV 113
>AF045555-1|AAC04859.2| 248|Homo sapiens wbscr1 alternative spliced
product protein.
Length = 248
Score = 31.9 bits (69), Expect = 2.4
Identities = 19/75 (25%), Positives = 34/75 (45%)
Frame = +3
Query: 408 YVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQA 587
YVGN+PF + + F L+ + V + K F ++EF +D +A
Sbjct: 45 YVGNLPFNTVQGDIDAIFKD------LSIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEA 98
Query: 588 MAFDGINFKGQSLKI 632
+ +DG +SL++
Sbjct: 99 LTYDGALLGDRSLRV 113
>AC005057-2|AAS07440.1| 136|Homo sapiens unknown protein.
Length = 136
Score = 31.9 bits (69), Expect = 2.4
Identities = 19/75 (25%), Positives = 34/75 (45%)
Frame = +3
Query: 408 YVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQA 587
YVGN+PF + + F L+ + V + K F ++EF +D +A
Sbjct: 45 YVGNLPFNTVQGDIDAIFKD------LSIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEA 98
Query: 588 MAFDGINFKGQSLKI 632
+ +DG +SL++
Sbjct: 99 LTYDGALLGDRSLRV 113
>AC005057-1|AAS07439.1| 156|Homo sapiens unknown protein.
Length = 156
Score = 31.9 bits (69), Expect = 2.4
Identities = 19/75 (25%), Positives = 34/75 (45%)
Frame = +3
Query: 408 YVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQA 587
YVGN+PF + + F L+ + V + K F ++EF +D +A
Sbjct: 45 YVGNLPFNTVQGDIDAIFKD------LSIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEA 98
Query: 588 MAFDGINFKGQSLKI 632
+ +DG +SL++
Sbjct: 99 LTYDGALLGDRSLRV 113
>AB014582-1|BAA31657.2| 973|Homo sapiens KIAA0682 protein protein.
Length = 973
Score = 31.9 bits (69), Expect = 2.4
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Frame = +3
Query: 393 QARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSID 572
++ RL+V N+P+ TEE+ + F++ LS L P+ + K FAF+ F +
Sbjct: 413 ESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHY----PIDSL-TKKPKGFAFITFMFPE 467
Query: 573 ETTQAMA-FDGINFKGQSLKI 632
+A + DG F+G+ L +
Sbjct: 468 HAVKAYSEVDGQVFQGRMLHV 488
>X70944-1|CAA50283.1| 707|Homo sapiens PTB-associated splicing
factor protein.
Length = 707
Score = 31.5 bits (68), Expect = 3.2
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Frame = +3
Query: 375 GSTITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAF- 551
G Q RL+VGN+P +TE+E F + G P IN K F F
Sbjct: 289 GEKTYTQRCRLFVGNLPADITEDEFKRLFAKY----------GEPG-EVFINKGKGFGFI 337
Query: 552 -LEFRSIDETTQAMAFDGINFKGQSLKIR 635
LE R++ E +A D +G+ L++R
Sbjct: 338 KLESRALAEIAKA-ELDDTPMRGRQLRVR 365
>BX640912-1|CAE45953.1| 613|Homo sapiens hypothetical protein
protein.
Length = 613
Score = 31.5 bits (68), Expect = 3.2
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Frame = +3
Query: 372 VGSTITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQIN---LDKN 542
+G I+ RL+VG+IP T+E +E F++ ++GL + + +L Q + ++
Sbjct: 214 LGVCISVANNRLFVGSIPKNKTKENILEEFSK---VTGLTEGLVDVILYHQPDDKKKNRG 270
Query: 543 FAFLEFRSIDETTQA 587
F FLE+ QA
Sbjct: 271 FCFLEYEDHKSAAQA 285
>BC105582-1|AAI05583.1| 173|Homo sapiens RBMX2 protein protein.
Length = 173
Score = 31.5 bits (68), Expect = 3.2
Identities = 21/90 (23%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Frame = +3
Query: 405 LYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQ 584
+++G +P+ +TE + + F+Q + + N V + K F FL + T
Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNI-----NLVRDKKTGKSKGFCFLCYEDQRSTIL 92
Query: 585 AMA-FDGINFKGQSLKIRRPHDYQPMPGTE 671
A+ F+GI KG+++++ +Y+ +E
Sbjct: 93 AVDNFNGIKIKGRTIRVDHVSNYRAPKDSE 122
>BC051192-1|AAH51192.1| 707|Homo sapiens splicing factor
proline/glutamine-rich (polypyrimidine tract binding
protein as protein.
Length = 707
Score = 31.5 bits (68), Expect = 3.2
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Frame = +3
Query: 375 GSTITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAF- 551
G Q RL+VGN+P +TE+E F + G P IN K F F
Sbjct: 289 GEKTYTQRCRLFVGNLPADITEDEFKRLFAKY----------GEPG-EVFINKGKGFGFI 337
Query: 552 -LEFRSIDETTQAMAFDGINFKGQSLKIR 635
LE R++ E +A D +G+ L++R
Sbjct: 338 KLESRALAEIAKA-ELDDTPMRGRQLRVR 365
>BC033750-1|AAH33750.1| 322|Homo sapiens RNA binding motif protein,
X-linked 2 protein.
Length = 322
Score = 31.5 bits (68), Expect = 3.2
Identities = 21/90 (23%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Frame = +3
Query: 405 LYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQ 584
+++G +P+ +TE + + F+Q + + N V + K F FL + T
Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNI-----NLVRDKKTGKSKGFCFLCYEDQRSTIL 92
Query: 585 AMA-FDGINFKGQSLKIRRPHDYQPMPGTE 671
A+ F+GI KG+++++ +Y+ +E
Sbjct: 93 AVDNFNGIKIKGRTIRVDHVSNYRAPKDSE 122
>BC027708-1|AAH27708.1| 525|Homo sapiens SFPQ protein protein.
Length = 525
Score = 31.5 bits (68), Expect = 3.2
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Frame = +3
Query: 375 GSTITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAF- 551
G Q RL+VGN+P +TE+E F + G P IN K F F
Sbjct: 289 GEKTYTQRCRLFVGNLPADITEDEFKRLFAKY----------GEPG-EVFINKGKGFGFI 337
Query: 552 -LEFRSIDETTQAMAFDGINFKGQSLKIR 635
LE R++ E +A D +G+ L++R
Sbjct: 338 KLESRALAEIAKA-ELDDTPMRGRQLRVR 365
>BC004534-1|AAH04534.2| 634|Homo sapiens SFPQ protein protein.
Length = 634
Score = 31.5 bits (68), Expect = 3.2
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Frame = +3
Query: 375 GSTITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAF- 551
G Q RL+VGN+P +TE+E F + G P IN K F F
Sbjct: 216 GEKTYTQRCRLFVGNLPADITEDEFKRLFAKY----------GEPG-EVFINKGKGFGFI 264
Query: 552 -LEFRSIDETTQAMAFDGINFKGQSLKIR 635
LE R++ E +A D +G+ L++R
Sbjct: 265 KLESRALAEIAKA-ELDDTPMRGRQLRVR 292
>BC003676-1|AAH03676.1| 163|Homo sapiens Unknown (protein for
IMAGE:3686686) protein.
Length = 163
Score = 31.5 bits (68), Expect = 3.2
Identities = 21/90 (23%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Frame = +3
Query: 405 LYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQ 584
+++G +P+ +TE + + F+Q + + N V + K F FL + T
Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNI-----NLVRDKKTGKSKGFCFLCYEDQRSTIL 92
Query: 585 AMA-FDGINFKGQSLKIRRPHDYQPMPGTE 671
A+ F+GI KG+++++ +Y+ +E
Sbjct: 93 AVDNFNGIKIKGRTIRVDHVSNYRAPKDSE 122
>BC001449-1|AAH01449.1| 636|Homo sapiens HNRPR protein protein.
Length = 636
Score = 31.5 bits (68), Expect = 3.2
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Frame = +3
Query: 372 VGSTITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQIN---LDKN 542
+G I+ RL+VG+IP T+E +E F++ ++GL + + +L Q + ++
Sbjct: 237 LGVCISVANNRLFVGSIPKNKTKENILEEFSK---VTGLTEGLVDVILYHQPDDKKKNRG 293
Query: 543 FAFLEFRSIDETTQA 587
F FLE+ QA
Sbjct: 294 FCFLEYEDHKSAAQA 308
>AL590434-2|CAI12467.1| 707|Homo sapiens splicing factor
proline/glutamine-rich (polypyrimidine tract binding
protein as protein.
Length = 707
Score = 31.5 bits (68), Expect = 3.2
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Frame = +3
Query: 375 GSTITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAF- 551
G Q RL+VGN+P +TE+E F + G P IN K F F
Sbjct: 289 GEKTYTQRCRLFVGNLPADITEDEFKRLFAKY----------GEPG-EVFINKGKGFGFI 337
Query: 552 -LEFRSIDETTQAMAFDGINFKGQSLKIR 635
LE R++ E +A D +G+ L++R
Sbjct: 338 KLESRALAEIAKA-ELDDTPMRGRQLRVR 365
>AL109936-4|CAI19027.1| 636|Homo sapiens heterogeneous nuclear
ribonucleoprotein R protein.
Length = 636
Score = 31.5 bits (68), Expect = 3.2
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Frame = +3
Query: 372 VGSTITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQIN---LDKN 542
+G I+ RL+VG+IP T+E +E F++ ++GL + + +L Q + ++
Sbjct: 237 LGVCISVANNRLFVGSIPKNKTKENILEEFSK---VTGLTEGLVDVILYHQPDDKKKNRG 293
Query: 543 FAFLEFRSIDETTQA 587
F FLE+ QA
Sbjct: 294 FCFLEYEDHKSAAQA 308
>AL050405-1|CAB43745.1| 322|Homo sapiens hypothetical protein
protein.
Length = 322
Score = 31.5 bits (68), Expect = 3.2
Identities = 21/90 (23%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Frame = +3
Query: 405 LYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQ 584
+++G +P+ +TE + + F+Q + + N V + K F FL + T
Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNI-----NLVRDKKTGKSKGFCFLCYEDQRSTIL 92
Query: 585 AMA-FDGINFKGQSLKIRRPHDYQPMPGTE 671
A+ F+GI KG+++++ +Y+ +E
Sbjct: 93 AVDNFNGIKIKGRTIRVDHVSNYRAPKDSE 122
>AL035423-8|CAI42444.1| 322|Homo sapiens RNA binding motif protein,
X-linked 2 protein.
Length = 322
Score = 31.5 bits (68), Expect = 3.2
Identities = 21/90 (23%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Frame = +3
Query: 405 LYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQ 584
+++G +P+ +TE + + F+Q + + N V + K F FL + T
Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNI-----NLVRDKKTGKSKGFCFLCYEDQRSTIL 92
Query: 585 AMA-FDGINFKGQSLKIRRPHDYQPMPGTE 671
A+ F+GI KG+++++ +Y+ +E
Sbjct: 93 AVDNFNGIKIKGRTIRVDHVSNYRAPKDSE 122
>AF151837-1|AAD34074.1| 351|Homo sapiens CGI-79 protein protein.
Length = 351
Score = 31.5 bits (68), Expect = 3.2
Identities = 21/90 (23%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Frame = +3
Query: 405 LYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQ 584
+++G +P+ +TE + + F+Q + + N V + K F FL + T
Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNI-----NLVRDKKTGKSKGFCFLCYEDQRSTIL 92
Query: 585 AMA-FDGINFKGQSLKIRRPHDYQPMPGTE 671
A+ F+GI KG+++++ +Y+ +E
Sbjct: 93 AVDNFNGIKIKGRTIRVDHVSNYRAPKDSE 122
>D78134-1|BAA11212.1| 172|Homo sapiens CIRP protein.
Length = 172
Score = 30.7 bits (66), Expect = 5.6
Identities = 17/78 (21%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Frame = +3
Query: 402 RLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETT 581
+L+VG + F E+ + F++ +S + + + F F+ F +ID+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDR-----ETQRSRGFGFVTFENIDDAK 61
Query: 582 QA-MAFDGINFKGQSLKI 632
A MA +G + G+ +++
Sbjct: 62 DAMMAMNGKSVDGRQIRV 79
>BT007210-1|AAP35874.1| 172|Homo sapiens cold inducible RNA binding
protein protein.
Length = 172
Score = 30.7 bits (66), Expect = 5.6
Identities = 17/78 (21%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Frame = +3
Query: 402 RLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETT 581
+L+VG + F E+ + F++ +S + + + F F+ F +ID+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDR-----ETQRSRGFGFVTFENIDDAK 61
Query: 582 QA-MAFDGINFKGQSLKI 632
A MA +G + G+ +++
Sbjct: 62 DAMMAMNGKSVDGRQIRV 79
>BC000901-1|AAH00901.1| 172|Homo sapiens cold inducible RNA binding
protein protein.
Length = 172
Score = 30.7 bits (66), Expect = 5.6
Identities = 17/78 (21%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Frame = +3
Query: 402 RLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETT 581
+L+VG + F E+ + F++ +S + + + F F+ F +ID+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDR-----ETQRSRGFGFVTFENIDDAK 61
Query: 582 QA-MAFDGINFKGQSLKI 632
A MA +G + G+ +++
Sbjct: 62 DAMMAMNGKSVDGRQIRV 79
>BC000403-1|AAH00403.1| 172|Homo sapiens cold inducible RNA binding
protein protein.
Length = 172
Score = 30.7 bits (66), Expect = 5.6
Identities = 17/78 (21%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Frame = +3
Query: 402 RLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETT 581
+L+VG + F E+ + F++ +S + + + F F+ F +ID+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDR-----ETQRSRGFGFVTFENIDDAK 61
Query: 582 QA-MAFDGINFKGQSLKI 632
A MA +G + G+ +++
Sbjct: 62 DAMMAMNGKSVDGRQIRV 79
>AL450998-10|CAH70858.1| 3664|Homo sapiens SMART/HDAC1 associated
repressor protein (SHARP) protein.
Length = 3664
Score = 30.7 bits (66), Expect = 5.6
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +3
Query: 384 ITRQARRLYVGNIPFGVTEEETMEFFNQ 467
+ R+ R L+VGN+P V EE+ +E F +
Sbjct: 1 MVRETRHLWVGNLPENVREEKIIEHFKR 28
>AL034555-4|CAI19526.1| 3664|Homo sapiens SMART/HDAC1 associated
repressor protein (SHARP) protein.
Length = 3664
Score = 30.7 bits (66), Expect = 5.6
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +3
Query: 384 ITRQARRLYVGNIPFGVTEEETMEFFNQ 467
+ R+ R L+VGN+P V EE+ +E F +
Sbjct: 1 MVRETRHLWVGNLPENVREEKIIEHFKR 28
>AF356524-1|AAK52750.1| 3664|Homo sapiens nuclear receptor
transcription cofactor protein.
Length = 3664
Score = 30.7 bits (66), Expect = 5.6
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +3
Query: 384 ITRQARRLYVGNIPFGVTEEETMEFFNQ 467
+ R+ R L+VGN+P V EE+ +E F +
Sbjct: 1 MVRETRHLWVGNLPENVREEKIIEHFKR 28
>AF021336-1|AAC51787.1| 172|Homo sapiens DNA damage-inducible RNA
binding protein protein.
Length = 172
Score = 30.7 bits (66), Expect = 5.6
Identities = 17/78 (21%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Frame = +3
Query: 402 RLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETT 581
+L+VG + F E+ + F++ +S + + + F F+ F +ID+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDR-----ETQRSRGFGFVTFENIDDAK 61
Query: 582 QA-MAFDGINFKGQSLKI 632
A MA +G + G+ +++
Sbjct: 62 DAMMAMNGKSVDGRQIRV 79
>AC004258-1|AAC04895.1| 172|Homo sapiens CIRP protein.
Length = 172
Score = 30.7 bits (66), Expect = 5.6
Identities = 17/78 (21%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Frame = +3
Query: 402 RLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETT 581
+L+VG + F E+ + F++ +S + + + F F+ F +ID+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDR-----ETQRSRGFGFVTFENIDDAK 61
Query: 582 QA-MAFDGINFKGQSLKI 632
A MA +G + G+ +++
Sbjct: 62 DAMMAMNGKSVDGRQIRV 79
>Z95327-4|CAI42681.1| 225|Homo sapiens cleavage stimulation factor,
3' pre-RNA, subunit 2, 64kDa protein.
Length = 225
Score = 30.3 bits (65), Expect = 7.3
Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 6/110 (5%)
Frame = +3
Query: 411 VGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM 590
VGNIP+ TEE+ + F++ + + V + K + F E++ + AM
Sbjct: 11 VGNIPYEATEEQLKDIFSEVGPV-----VSFRLVYDRETGKPKGYGFCEYQDQETALSAM 65
Query: 591 A-FDGINFKGQSLKI-----RRPHDYQPMPGTENPAINVPAGVISTVVPD 722
+G F G++L++ + + GT P I P G T+ P+
Sbjct: 66 RNLNGREFSGRALRVDNAASEKNKEELKSLGTGAPVIESPYG--ETISPE 113
>U09123-1|AAB60650.1| 341|Homo sapiens hnRNP protein A2 protein.
Length = 341
Score = 30.3 bits (65), Expect = 7.3
Identities = 21/82 (25%), Positives = 37/82 (45%)
Frame = +3
Query: 393 QARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSID 572
Q R+L++G + F TEE ++ Q L+ +P + F F+ F S+
Sbjct: 7 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCV-VMRDPA----SKRSRGFGFVTFSSMA 61
Query: 573 ETTQAMAFDGINFKGQSLKIRR 638
E AMA + G+ ++ +R
Sbjct: 62 EVDAAMAARPHSIDGRVVEPKR 83
>M29065-1|AAA36574.1| 341|Homo sapiens protein ( Human hnRNP A2
protein mRNA. ).
Length = 341
Score = 30.3 bits (65), Expect = 7.3
Identities = 21/82 (25%), Positives = 37/82 (45%)
Frame = +3
Query: 393 QARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSID 572
Q R+L++G + F TEE ++ Q L+ +P + F F+ F S+
Sbjct: 7 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCV-VMRDPA----SKRSRGFGFVTFSSMA 61
Query: 573 ETTQAMAFDGINFKGQSLKIRR 638
E AMA + G+ ++ +R
Sbjct: 62 EVDAAMAARPHSIDGRVVEPKR 83
>M29064-1|AAA60271.1| 353|Homo sapiens SNRPB1 protein.
Length = 353
Score = 30.3 bits (65), Expect = 7.3
Identities = 21/82 (25%), Positives = 37/82 (45%)
Frame = +3
Query: 393 QARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSID 572
Q R+L++G + F TEE ++ Q L+ +P + F F+ F S+
Sbjct: 19 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCV-VMRDPA----SKRSRGFGFVTFSSMA 73
Query: 573 ETTQAMAFDGINFKGQSLKIRR 638
E AMA + G+ ++ +R
Sbjct: 74 EVDAAMAARPHSIDGRVVEPKR 95
>D28877-2|BAA06032.1| 341|Homo sapiens hnRNP A2 protein protein.
Length = 341
Score = 30.3 bits (65), Expect = 7.3
Identities = 21/82 (25%), Positives = 37/82 (45%)
Frame = +3
Query: 393 QARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSID 572
Q R+L++G + F TEE ++ Q L+ +P + F F+ F S+
Sbjct: 7 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCV-VMRDPA----SKRSRGFGFVTFSSMA 61
Query: 573 ETTQAMAFDGINFKGQSLKIRR 638
E AMA + G+ ++ +R
Sbjct: 62 EVDAAMAARPHSIDGRVVEPKR 83
>D28877-1|BAA06031.1| 353|Homo sapiens hnRNP B1 protein protein.
Length = 353
Score = 30.3 bits (65), Expect = 7.3
Identities = 21/82 (25%), Positives = 37/82 (45%)
Frame = +3
Query: 393 QARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSID 572
Q R+L++G + F TEE ++ Q L+ +P + F F+ F S+
Sbjct: 19 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCV-VMRDPA----SKRSRGFGFVTFSSMA 73
Query: 573 ETTQAMAFDGINFKGQSLKIRR 638
E AMA + G+ ++ +R
Sbjct: 74 EVDAAMAARPHSIDGRVVEPKR 95
>BC000506-1|AAH00506.3| 249|Homo sapiens HNRPA2B1 protein protein.
Length = 249
Score = 30.3 bits (65), Expect = 7.3
Identities = 21/82 (25%), Positives = 37/82 (45%)
Frame = +3
Query: 393 QARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSID 572
Q R+L++G + F TEE ++ Q L+ +P + F F+ F S+
Sbjct: 7 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCV-VMRDPA----SKRSRGFGFVTFSSMA 61
Query: 573 ETTQAMAFDGINFKGQSLKIRR 638
E AMA + G+ ++ +R
Sbjct: 62 EVDAAMAARPHSIDGRVVEPKR 83
>AM295005-1|CAL25726.1| 289|Homo sapiens boll protein protein.
Length = 289
Score = 30.3 bits (65), Expect = 7.3
Identities = 24/117 (20%), Positives = 53/117 (45%), Gaps = 8/117 (6%)
Frame = +3
Query: 306 MQAAGQIPANIVADTPQAAVPVVGSTITRQAR-------RLYVGNIPFGVTEEETMEFFN 464
MQ + Q+ + ++ +P PV + T R R++VG I F E + +FF+
Sbjct: 1 MQTSNQMQTDSLSPSPNPVSPVPLNNPTSAPRYGTVIPNRIFVGGIDFKTNESDLRKFFS 60
Query: 465 QQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGINFKGQSLKI 632
Q + + ++ + + K + F+ F + ++ + + + +N+K + L I
Sbjct: 61 QYGSVKEV------KIVNDRAGVSKGYGFVTFETQEDAQKILQEAEKLNYKDKKLNI 111
>AK093453-1|BAC04171.1| 339|Homo sapiens protein ( Homo sapiens
cDNA FLJ36134 fis, clone TESTI2024648, weakly similar to
Homo sapiens germline specific RNA binding protein
(DAZL1) mRNA. ).
Length = 339
Score = 30.3 bits (65), Expect = 7.3
Identities = 24/117 (20%), Positives = 53/117 (45%), Gaps = 8/117 (6%)
Frame = +3
Query: 306 MQAAGQIPANIVADTPQAAVPVVGSTITRQAR-------RLYVGNIPFGVTEEETMEFFN 464
MQ + Q+ + ++ +P PV + T R R++VG I F E + +FF+
Sbjct: 1 MQTSNQMQTDSLSPSPNPVSPVPLNNPTSAPRYGTVIPNRIFVGGIDFKTNESDLRKFFS 60
Query: 465 QQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGINFKGQSLKI 632
Q + + ++ + + K + F+ F + ++ + + + +N+K + L I
Sbjct: 61 QYGSVKEV------KIVNDRAGVSKGYGFVTFETQEDAQKILQEAEKLNYKDKKLNI 111
>X67337-1|CAA47752.1| 551|Homo sapiens Human pre-mRNA cleavage
factor I 68 kDa subunit protein.
Length = 551
Score = 29.9 bits (64), Expect = 9.7
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +3
Query: 324 IPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEETME 455
+P + D + A P V T T + LY+GN+ + T+E+ E
Sbjct: 56 LPPTVGDDVGKGAAPNVVYTYTGKRIALYIGNLTWWTTDEDLTE 99
>X67336-1|CAA47751.1| 551|Homo sapiens HPBRII-7 protein.
Length = 551
Score = 29.9 bits (64), Expect = 9.7
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +3
Query: 324 IPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEETME 455
+P + D + A P V T T + LY+GN+ + T+E+ E
Sbjct: 56 LPPTVGDDVGKGAAPNVVYTYTGKRIALYIGNLTWWTTDEDLTE 99
>BC005000-1|AAH05000.1| 478|Homo sapiens CPSF6 protein protein.
Length = 478
Score = 29.9 bits (64), Expect = 9.7
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +3
Query: 324 IPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEETME 455
+P + D + A P V T T + LY+GN+ + T+E+ E
Sbjct: 56 LPPTVGDDVGKGAAPNVVYTYTGKRIALYIGNLTWWTTDEDLTE 99
>BC000714-1|AAH00714.1| 588|Homo sapiens CPSF6 protein protein.
Length = 588
Score = 29.9 bits (64), Expect = 9.7
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +3
Query: 324 IPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEETME 455
+P + D + A P V T T + LY+GN+ + T+E+ E
Sbjct: 56 LPPTVGDDVGKGAAPNVVYTYTGKRIALYIGNLTWWTTDEDLTE 99
>AK223568-1|BAD97288.1| 551|Homo sapiens cleavage and
polyadenylation specific factor 6, 68 kD subunit variant
protein.
Length = 551
Score = 29.9 bits (64), Expect = 9.7
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +3
Query: 324 IPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEETME 455
+P + D + A P V T T + LY+GN+ + T+E+ E
Sbjct: 56 LPPTVGDDVGKGAAPNVVYTYTGKRIALYIGNLTWWTTDEDLTE 99
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,678,912
Number of Sequences: 237096
Number of extensions: 2355663
Number of successful extensions: 8913
Number of sequences better than 10.0: 101
Number of HSP's better than 10.0 without gapping: 8676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8900
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8567175942
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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