Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt20d13
(689 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY217747-1|AAP45005.1| 246|Apis mellifera short-chain dehydroge... 45 8e-07
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 24 1.2
EF625898-1|ABR45905.1| 686|Apis mellifera hexamerin protein. 22 4.8
AB073998-1|BAC76402.1| 339|Apis mellifera preprotachykinin prot... 22 4.8
AB073996-1|BAC76400.1| 215|Apis mellifera preprotachykinin prot... 22 4.8
AB073995-1|BAC76399.1| 301|Apis mellifera preprotachykinin prot... 22 4.8
DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channe... 21 8.4
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 21 8.4
AY463910-1|AAR24352.1| 843|Apis mellifera metabotropic glutamat... 21 8.4
AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl sub... 21 8.4
AB267886-1|BAF46356.1| 567|Apis mellifera ecdysteroid receptor ... 21 8.4
AB161181-1|BAD08343.1| 933|Apis mellifera metabotropic glutamat... 21 8.4
>AY217747-1|AAP45005.1| 246|Apis mellifera short-chain
dehydrogenase/reductase protein.
Length = 246
Score = 44.8 bits (101), Expect = 8e-07
Identities = 49/216 (22%), Positives = 89/216 (41%), Gaps = 5/216 (2%)
Frame = +3
Query: 39 SFTNKVVLVTXXXXXXXXXXXVHFAKEGADVAIVGRNVTKLDNVARECAQVGKKPLIIKA 218
++ ++V LVT +G V + V K+ + E K + ++
Sbjct: 4 NWIDEVALVTGANSGIGKCLIECLVGKGMKVIGIAPQVDKMKTLVEELKSKPGKLVPLQC 63
Query: 219 DISNDEEAKTIVQQTIDAFGKLDVLINNAGMNKSGSLLAGNLLESYDAVTATNLRAVILI 398
D+SN + +++ G +D+LINNA +N +L +L+ + + NL + +
Sbjct: 64 DLSNQNDILKVIEWVEKNLGAIDILINNATINIDVTLQNDEVLD-WKKIFDINLLGLTCM 122
Query: 399 TSLAAPHLIE---TKGNIINVSSIGG-TMVPM-PGFLAYCMGKASLNHFTRGIALELAPR 563
+ + G I+N++ G ++PM AY K +L T + ELA
Sbjct: 123 IQEVLKLMKKKGINNGIIVNINDASGLNLLPMNRNRPAYLASKCALTTLTDCLRSELAQC 182
Query: 564 GVRANIISPGPVLTDIIENSDNQISWDIFRAATALK 671
+IS P D++E +D W + ALK
Sbjct: 183 ESNIKVISISP---DLVE-TDMTAQWLKENSRLALK 214
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 24.2 bits (50), Expect = 1.2
Identities = 14/53 (26%), Positives = 22/53 (41%)
Frame = -2
Query: 442 MFPFVSMRCGAARLVIKMTALRLVAVTASYDSRRLPASRDPDLFIPALLMSTS 284
+ P + + C V T L V S P ++P +F+P MST+
Sbjct: 787 ILPMIPVYCVPVPQVNDSTILSPVREKLSSSQPMQPPQQNPYMFLPVSYMSTT 839
>EF625898-1|ABR45905.1| 686|Apis mellifera hexamerin protein.
Length = 686
Score = 22.2 bits (45), Expect = 4.8
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +3
Query: 264 IDAFGKLDVLINNAGMNKSGSLLAGN 341
ID +GK + G+N G+++ GN
Sbjct: 346 IDEYGKKIDIYTPEGLNMLGNVIEGN 371
>AB073998-1|BAC76402.1| 339|Apis mellifera preprotachykinin
protein.
Length = 339
Score = 22.2 bits (45), Expect = 4.8
Identities = 7/17 (41%), Positives = 13/17 (76%)
Frame = -1
Query: 428 LDEVRSRKARYQNDRSQ 378
LDE++ + R+Q+ RS+
Sbjct: 127 LDEIKKKTTRFQDSRSK 143
>AB073996-1|BAC76400.1| 215|Apis mellifera preprotachykinin
protein.
Length = 215
Score = 22.2 bits (45), Expect = 4.8
Identities = 7/17 (41%), Positives = 13/17 (76%)
Frame = -1
Query: 428 LDEVRSRKARYQNDRSQ 378
LDE++ + R+Q+ RS+
Sbjct: 127 LDEIKKKTTRFQDSRSK 143
>AB073995-1|BAC76399.1| 301|Apis mellifera preprotachykinin
protein.
Length = 301
Score = 22.2 bits (45), Expect = 4.8
Identities = 7/17 (41%), Positives = 13/17 (76%)
Frame = -1
Query: 428 LDEVRSRKARYQNDRSQ 378
LDE++ + R+Q+ RS+
Sbjct: 127 LDEIKKKTTRFQDSRSK 143
>DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channel
protein.
Length = 489
Score = 21.4 bits (43), Expect = 8.4
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +3
Query: 564 GVRANIISPGPVLTDIIENSDNQIS 638
G +AN PG DIIE D ++S
Sbjct: 354 GSKANSPFPGSTEADIIELQDLRMS 378
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 21.4 bits (43), Expect = 8.4
Identities = 6/11 (54%), Positives = 9/11 (81%)
Frame = +2
Query: 452 IQYRWNHGTNA 484
I+Y+WN G N+
Sbjct: 166 IRYKWNEGPNS 176
>AY463910-1|AAR24352.1| 843|Apis mellifera metabotropic glutamate
receptor 1 protein.
Length = 843
Score = 21.4 bits (43), Expect = 8.4
Identities = 6/14 (42%), Positives = 9/14 (64%)
Frame = -3
Query: 279 SRRRQWFAERWSSL 238
+RR WF+E W +
Sbjct: 275 NRRNPWFSEYWEEV 288
>AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl
subunit protein.
Length = 365
Score = 21.4 bits (43), Expect = 8.4
Identities = 6/11 (54%), Positives = 9/11 (81%)
Frame = +2
Query: 452 IQYRWNHGTNA 484
I+Y+WN G N+
Sbjct: 105 IRYKWNEGPNS 115
>AB267886-1|BAF46356.1| 567|Apis mellifera ecdysteroid receptor A
isoform protein.
Length = 567
Score = 21.4 bits (43), Expect = 8.4
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -1
Query: 455 GYVYDVSLRLDEVRSRKARYQNDRSQISRCD 363
GYV +S +E+ R +QN+ Q S D
Sbjct: 326 GYVKPISPEQEELIHRLVYFQNEYEQPSEED 356
>AB161181-1|BAD08343.1| 933|Apis mellifera metabotropic glutamate
receptor protein.
Length = 933
Score = 21.4 bits (43), Expect = 8.4
Identities = 6/14 (42%), Positives = 9/14 (64%)
Frame = -3
Query: 279 SRRRQWFAERWSSL 238
+RR WF+E W +
Sbjct: 365 NRRNPWFSEYWEEV 378
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,759
Number of Sequences: 438
Number of extensions: 3827
Number of successful extensions: 20
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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