Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20d10
         (638 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    58   1e-09
SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   1.7  
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    27   1.7  
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    26   5.3  
SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces ...    25   9.2  
SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit Gsa1...    25   9.2  

>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 58.0 bits (134), Expect = 1e-09
 Identities = 40/139 (28%), Positives = 63/139 (45%), Gaps = 1/139 (0%)
 Frame = +1

Query: 223 QLFKPVPTVLQGTVLPF-LFIYPLVFYSWIVVYGIEDNFEAGFVTVAVIATVQILICLCC 399
           QL+  +PT     V PF LF+YP + Y +      E   E  ++T   + T+  L  L  
Sbjct: 16  QLYIKLPTFFHLYVWPFALFVYPYIGYVYQNKLYSE---EVRYLTYIAVGTIHALFWLAG 72

Query: 400 YWSVHINCFLSCSAVKDPIQAEVVKVVPTSNNGSSELVRLHHTKSTKKDSIHPDVWFIFQ 579
            W+  + C ++C       QA  + V P+    SS +  +  TK    DS      F FQ
Sbjct: 73  EWNTKVYCLMTCRKTDKVEQATHILVTPSKIGESSSVEPI--TKLVLPDSQTIQYSFSFQ 130

Query: 580 KSKYVYDWDKKNFHTIEFP 636
           + +++Y+ +K  F  I FP
Sbjct: 131 RKRFIYEPEKGCFANITFP 149


>SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 115

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 14/56 (25%), Positives = 29/56 (51%)
 Frame = +1

Query: 259 TVLPFLFIYPLVFYSWIVVYGIEDNFEAGFVTVAVIATVQILICLCCYWSVHINCF 426
           + +  L +  ++++S ++V        A F T+AVI+   ++ CL  YW ++   F
Sbjct: 60  SAINILTLIIVLYFSLVIVNKTTSIALALFKTLAVISFFLLIGCLFAYWFINNGSF 115


>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1026

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 4/101 (3%)
 Frame = +1

Query: 106  YHLVKIWQLR*NPYQLIEF-FIATSMVKMQSSLDDLVQYTQLFKPVPTVLQGTVLPFLFI 282
            Y L  I  LR + + + +  F+++ +++   S+D  +   +L     +V    + P  FI
Sbjct: 736  YILSLIVSLRPSAFDVSQLKFLSSYLLQKSESMDYDLTAIRLLSNGFSVFSKHIDPAKFI 795

Query: 283  YPLVFYSWIVVYGIEDN---FEAGFVTVAVIATVQILICLC 396
            Y LV  S      ++D         V V+V   V +L CLC
Sbjct: 796  YNLVLSSLENTKDLDDKNSILYRSIVDVSVSNAVLLLTCLC 836


>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +1

Query: 487 SNNGSSELVRLHHTKSTKKDSIHPDVWFIF 576
           ++NG++++V   H++ T  +S H D W I+
Sbjct: 669 ASNGAADMVTQTHSEGTFSNSTHGD-WLIY 697


>SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = +1

Query: 271 FLFIYPLVFYSWIVVYGIEDNFEAGFVTVAVIATVQILICLCCY 402
           FL++ P  F   + VY    NF   F+ +  + +  I I L  +
Sbjct: 192 FLYVAPAYFVYLLRVYCFTPNFRPQFLNILKLGSTVISIFLLAF 235


>SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit
           Gsa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +1

Query: 505 ELVRLHHTKSTKKDSIHPDVWFIFQKSKYVYDWDKKN 615
           E +RLH    TK D     +W ++QK +      K+N
Sbjct: 81  EFLRLHLQSITKYDEFMNKLWNLYQKHREAVAHLKEN 117


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,652,416
Number of Sequences: 5004
Number of extensions: 53579
Number of successful extensions: 171
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)