Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt20d07
(762 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0649 + 23138442-23138842,23139576-23139849,23139929-231405... 33 0.33
09_04_0424 + 17444261-17444665,17445974-17446367,17447367-174474... 32 0.43
09_04_0260 - 16197522-16197669,16198027-16198130,16198508-161987... 30 1.7
04_04_1536 - 34207425-34207490,34207801-34208268,34208345-342084... 30 1.7
10_06_0146 + 11230357-11230364,11230847-11230893,11231535-112316... 29 3.1
08_02_0781 - 21157715-21157783,21158869-21159087,21161181-211613... 29 3.1
07_01_0277 - 2038757-2039542 29 3.1
12_02_0077 - 13288916-13289659,13289689-13289691 29 4.0
08_01_0510 + 4455805-4456637,4457837-4457912 29 4.0
08_02_1023 - 23710825-23710950,23711037-23711120,23711367-237114... 28 9.3
08_02_0602 + 19183549-19184919 28 9.3
06_03_1310 + 29238644-29240260 28 9.3
04_04_0658 + 27006245-27006305,27006447-27006523,27006798-270072... 28 9.3
01_06_1217 + 35485182-35485949 28 9.3
>06_03_0649 +
23138442-23138842,23139576-23139849,23139929-23140562,
23140771-23140826,23141178-23141282,23141295-23141535,
23142686-23142690
Length = 571
Score = 32.7 bits (71), Expect = 0.33
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = +2
Query: 287 PKPPELSPIYLPVSP-VMPVQPLTSLTL-TQTASGPE 391
P+PP+ SPI++P SP P P +SL T TA P+
Sbjct: 69 PRPPQSSPIFVPDSPNPSPAAPTSSLASGTSTARPPQ 105
>09_04_0424 +
17444261-17444665,17445974-17446367,17447367-17447425,
17447507-17447637,17447737-17447833,17447936-17448100
Length = 416
Score = 32.3 bits (70), Expect = 0.43
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 248 PARAIMQVKHQRWPKPPELSPIYLPVSPVMPVQP 349
P A M ++HQ P PP+ +P ++P V P P
Sbjct: 45 PGAAAMVMQHQMAPAPPQFAPHFVPFHAVGPPPP 78
>09_04_0260 -
16197522-16197669,16198027-16198130,16198508-16198719,
16198795-16198900,16199006-16199119,16199200-16199417,
16199837-16199900,16199982-16200335,16200609-16200767,
16201486-16202907
Length = 966
Score = 30.3 bits (65), Expect = 1.7
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +1
Query: 247 ASQGDYASQASAVAQTAGIIAHLSAGIPG 333
A G AS+ + V +T G+++ +S+G+PG
Sbjct: 99 APAGRAASKGAGVGETLGVVSRVSSGVPG 127
>04_04_1536 -
34207425-34207490,34207801-34208268,34208345-34208485,
34208582-34208820,34209950-34210436
Length = 466
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +1
Query: 52 FLVLLVATSAYAAPSVTINQYSDNEIPRDIDDGKASSVISRAWD 183
FL+LL+ +A AAP ++I Y+ R +++G + A+D
Sbjct: 10 FLLLLIVGAATAAPDMSIISYNAEHGARGLEEGPTEAEARAAYD 53
>10_06_0146 +
11230357-11230364,11230847-11230893,11231535-11231642,
11231789-11231828,11231995-11232757
Length = 321
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/56 (25%), Positives = 25/56 (44%)
Frame = -1
Query: 432 SEEGTERLSEAGEVSGPDAVCVRVNDVSGCTGITGDTGR*MGDNSGGLGHR*CLTC 265
S++ +++L +GE++ ND ++ + DNS G HR C C
Sbjct: 213 SQQQSQQLGISGEINSETNASNEDNDEQATQSVSFQQDQSQEDNSNGREHRVCFNC 268
>08_02_0781 -
21157715-21157783,21158869-21159087,21161181-21161329,
21161694-21161932,21162045-21162229
Length = 286
Score = 29.5 bits (63), Expect = 3.1
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = -1
Query: 543 VIDSSTSGTT--QGWSDRVSELTRVDDELIDKIQVLSHVSEEGT 418
+I+ T+ T G S RVSEL ++ L DK+ V+ S GT
Sbjct: 46 IINDGTAPATIVMGVSGRVSELVEIEPVLRDKVPVIRRFSGGGT 89
>07_01_0277 - 2038757-2039542
Length = 261
Score = 29.5 bits (63), Expect = 3.1
Identities = 20/64 (31%), Positives = 27/64 (42%)
Frame = +1
Query: 166 ISRAWDYVDDTDKSIAILNVQEILKDMASQGDYASQASAVAQTAGIIAHLSAGIPGDACA 345
+ W YVDD K A V+E + S GD TA +A + +PG A A
Sbjct: 12 VDEEWVYVDDFSKEAAA-PVEEA-SPVDSSGDKDDDDGKSGSTAADVAAVDGDLPGGATA 69
Query: 346 AANV 357
+ V
Sbjct: 70 SEAV 73
>12_02_0077 - 13288916-13289659,13289689-13289691
Length = 248
Score = 29.1 bits (62), Expect = 4.0
Identities = 14/55 (25%), Positives = 24/55 (43%)
Frame = -1
Query: 429 EEGTERLSEAGEVSGPDAVCVRVNDVSGCTGITGDTGR*MGDNSGGLGHR*CLTC 265
+E +++L +GE++ ND ++ + DNS G HR C C
Sbjct: 141 QEQSQQLGISGEINSDTNASNEDNDEQATQSVSFQQDQSQEDNSNGREHRVCFNC 195
>08_01_0510 + 4455805-4456637,4457837-4457912
Length = 302
Score = 29.1 bits (62), Expect = 4.0
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Frame = -1
Query: 507 WSDRVSELTRVDDELID--KIQVLSHVSEEG 421
W D+V ELT D+ ID +++V+SH E G
Sbjct: 69 WRDKVRELTFDIDDCIDSFEVRVISHQQERG 99
>08_02_1023 -
23710825-23710950,23711037-23711120,23711367-23711492,
23711593-23711712,23712046-23712153,23712243-23712395,
23712505-23712600,23712716-23712800,23713278-23714268,
23714870-23714915,23715806-23715964,23716516-23716651,
23716734-23716900,23717366-23717696,23717827-23718062,
23718326-23718514
Length = 1050
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -1
Query: 213 GDAFVSVIDVVPCT*DYGTSFS 148
G F SV+D VPC DY FS
Sbjct: 107 GTGFYSVVDAVPCRRDYLKMFS 128
>08_02_0602 + 19183549-19184919
Length = 456
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 271 QASAVAQTAGIIAHLSAGIPGDACAAANVINS 366
QA+A + + A L AG+ DACA +V +S
Sbjct: 192 QAAAAGASGSVAAALPAGVLDDACADLDVTSS 223
>06_03_1310 + 29238644-29240260
Length = 538
Score = 27.9 bits (59), Expect = 9.3
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Frame = +2
Query: 203 KASPSSTFKRS*RTWPARAIMQVKHQRWPK--PPELSPIYLPVSPVMPVQPLTSLTLTQT 376
+A+P +T + RT A + H P+ PP P P +P P T ++
Sbjct: 363 QATPPTTRRPGGRTPLAPHRSPLPHHMPPRRTPPTPPPPSSPTPSHLPPPPPTYSESPKS 422
Query: 377 ASGPETSPASDNLSVPSSDT 436
+ P TSP S + + P S +
Sbjct: 423 SMPPSTSPPSSHGASPPSSS 442
>04_04_0658 +
27006245-27006305,27006447-27006523,27006798-27007225,
27007614-27007882,27007966-27008249
Length = 372
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = +1
Query: 307 AHLSAGIPGDACAAANVINSYTDGVRSGNFAGFRQSLGPFF 429
+ G+PG +C+ A +N+ ++G + AG +++ P F
Sbjct: 168 SRFGVGVPGYSCSNATKVNATSEGEKPELPAGDGEAVAPVF 208
>01_06_1217 + 35485182-35485949
Length = 255
Score = 27.9 bits (59), Expect = 9.3
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +2
Query: 182 TTSMTLTKASPSSTFKRS*RTWPARAIMQVKHQRWPKPPELSPIYLPVSPVMPV 343
+T++ ASP +F S +A++ H P PP+L P P SP + V
Sbjct: 23 STALAAAAASPRLSFS-SPSLKDLQALLLSDHSPSPTPPQLPPNTAPCSPSVRV 75
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,527,814
Number of Sequences: 37544
Number of extensions: 426348
Number of successful extensions: 1653
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1651
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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