Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20d07
         (762 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68338-9|CAA92762.2| 2923|Caenorhabditis elegans Hypothetical pr...    30   2.1  
Z68338-8|CAA92761.2| 2920|Caenorhabditis elegans Hypothetical pr...    30   2.1  
Z54218-6|CAA90960.2| 2923|Caenorhabditis elegans Hypothetical pr...    30   2.1  
Z54218-5|CAA90959.2| 2920|Caenorhabditis elegans Hypothetical pr...    30   2.1  
DQ340626-1|ABC65814.1|  782|Caenorhabditis elegans chondroitin p...    30   2.1  
AF022968-9|AAB69883.3|  782|Caenorhabditis elegans Chondroitin p...    30   2.1  
Z68760-2|CAA92995.1|  597|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z68270-1|CAA92566.2|  458|Caenorhabditis elegans Hypothetical pr...    28   6.3  
U61953-1|AAC48075.2|  569|Caenorhabditis elegans Hypothetical pr...    28   6.3  
U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical pr...    28   6.3  
U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical pr...    28   6.3  
U51998-5|AAL00856.2|  648|Caenorhabditis elegans Hypothetical pr...    28   6.3  
AL117204-42|CAB55146.2|  714|Caenorhabditis elegans Hypothetical...    28   6.3  
AF039719-3|AAB96756.1|  730|Caenorhabditis elegans Blistered cut...    28   6.3  

>Z68338-9|CAA92762.2| 2923|Caenorhabditis elegans Hypothetical
           protein T24B8.7b protein.
          Length = 2923

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -1

Query: 480 RVDDELIDKIQVLSHVSEEGTERLSEAGEVSGPDAVCVRVNDVSG 346
           ++ D L+D+++ + HV+ E  E    A + S  +AV    NDV G
Sbjct: 720 KLADPLLDRLENIRHVAHERFEASLNANQDSQSNAVFESTNDVFG 764


>Z68338-8|CAA92761.2| 2920|Caenorhabditis elegans Hypothetical
           protein T24B8.7a protein.
          Length = 2920

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -1

Query: 480 RVDDELIDKIQVLSHVSEEGTERLSEAGEVSGPDAVCVRVNDVSG 346
           ++ D L+D+++ + HV+ E  E    A + S  +AV    NDV G
Sbjct: 720 KLADPLLDRLENIRHVAHERFEASLNANQDSQSNAVFESTNDVFG 764


>Z54218-6|CAA90960.2| 2923|Caenorhabditis elegans Hypothetical
           protein T24B8.7b protein.
          Length = 2923

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -1

Query: 480 RVDDELIDKIQVLSHVSEEGTERLSEAGEVSGPDAVCVRVNDVSG 346
           ++ D L+D+++ + HV+ E  E    A + S  +AV    NDV G
Sbjct: 720 KLADPLLDRLENIRHVAHERFEASLNANQDSQSNAVFESTNDVFG 764


>Z54218-5|CAA90959.2| 2920|Caenorhabditis elegans Hypothetical
           protein T24B8.7a protein.
          Length = 2920

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -1

Query: 480 RVDDELIDKIQVLSHVSEEGTERLSEAGEVSGPDAVCVRVNDVSG 346
           ++ D L+D+++ + HV+ E  E    A + S  +AV    NDV G
Sbjct: 720 KLADPLLDRLENIRHVAHERFEASLNANQDSQSNAVFESTNDVFG 764


>DQ340626-1|ABC65814.1|  782|Caenorhabditis elegans chondroitin
           proteoglycan-4 protein.
          Length = 782

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = -1

Query: 450 QVLSHVSEEGTERLS-EAGEVSGPDAVCVRVNDVSGCTGITGDTGR*MGDNSG 295
           ++L H+SE+ TE  S  +GE+SG  +     N+ SG      D     GDNSG
Sbjct: 508 EILEHISEKSTEESSGSSGEMSGDGS----DNEASGEGSGEYDASGSSGDNSG 556


>AF022968-9|AAB69883.3|  782|Caenorhabditis elegans Chondroitin
           proteoglycan protein 4 protein.
          Length = 782

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = -1

Query: 450 QVLSHVSEEGTERLS-EAGEVSGPDAVCVRVNDVSGCTGITGDTGR*MGDNSG 295
           ++L H+SE+ TE  S  +GE+SG  +     N+ SG      D     GDNSG
Sbjct: 508 EILEHISEKSTEESSGSSGEMSGDGS----DNEASGEGSGEYDASGSSGDNSG 556


>Z68760-2|CAA92995.1|  597|Caenorhabditis elegans Hypothetical
           protein F36H1.3 protein.
          Length = 597

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +2

Query: 287 PKPPEL-SPIYLPVSPVMPVQPLTSLTLTQTASGPETSPASDNLSVPSSDT 436
           P PP + SP  LP +P    +P+T          P +SPA   +  P++ T
Sbjct: 503 PAPPAIPSPAKLPTAPPPVEKPVTPSPSASPLPSPVSSPAPQLVQKPTTPT 553


>Z68270-1|CAA92566.2|  458|Caenorhabditis elegans Hypothetical
           protein ZC410.2 protein.
          Length = 458

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
 Frame = -1

Query: 633 RVVQSLDDAVLFI*ETRVTAG*DCIPSGFEVIDSSTSGTTQGWSDRVSELTRVDDELID- 457
           R +  +    +F+ ET VT     +P+GF V   +T G+T      +   +R ++E  + 
Sbjct: 15  RRIAQVQPKSVFVPETIVTT----LPNGFRVATENTGGSTATIGVFIDAGSRYENEKNNG 70

Query: 456 KIQVLSHVSEEGTERLSEAG 397
               L H++ +GT R +  G
Sbjct: 71  TAHFLEHMAFKGTPRRTRMG 90


>U61953-1|AAC48075.2|  569|Caenorhabditis elegans Hypothetical
           protein R08C7.6 protein.
          Length = 569

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +2

Query: 296 PELSPIYLPVSPVMPVQPLTSLTLTQTASGPETSPASDNLSVP 424
           P++ P  LPV   +    + S+ +  +    E  P SD+ SVP
Sbjct: 344 PKMPPFVLPVETSVGCDNMNSVAIVHSEIDTEFRPMSDSQSVP 386


>U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical
           protein C12D12.1a protein.
          Length = 769

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +2

Query: 287 PKPPELSPIYLPVSPVMPVQPL-TSLTLTQTASGPETSPASDNLSVPSSDT 436
           P  P  +P   PV+   P     T+ T T T +  +T+P +  ++ PS+ T
Sbjct: 669 PTSPTTAPTVPPVTTTTPTTTTSTTTTTTTTTTTTQTTPTTPVVTTPSTIT 719


>U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical
           protein C12D12.1c protein.
          Length = 825

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +2

Query: 287 PKPPELSPIYLPVSPVMPVQPL-TSLTLTQTASGPETSPASDNLSVPSSDT 436
           P  P  +P   PV+   P     T+ T T T +  +T+P +  ++ PS+ T
Sbjct: 725 PTSPTTAPTVPPVTTTTPTTTTSTTTTTTTTTTTTQTTPTTPVVTTPSTIT 775


>U51998-5|AAL00856.2|  648|Caenorhabditis elegans Hypothetical
           protein C12D12.1b protein.
          Length = 648

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +2

Query: 287 PKPPELSPIYLPVSPVMPVQPL-TSLTLTQTASGPETSPASDNLSVPSSDT 436
           P  P  +P   PV+   P     T+ T T T +  +T+P +  ++ PS+ T
Sbjct: 548 PTSPTTAPTVPPVTTTTPTTTTSTTTTTTTTTTTTQTTPTTPVVTTPSTIT 598


>AL117204-42|CAB55146.2|  714|Caenorhabditis elegans Hypothetical
           protein Y116A8C.4 protein.
          Length = 714

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/29 (51%), Positives = 17/29 (58%)
 Frame = -2

Query: 413 DCLKPAKFPDLTPSV*ELMTLAAAQASPG 327
           D +KPA   DL PSV + M L  A  SPG
Sbjct: 286 DKMKPAVLDDLVPSV-DFMGLVKAMISPG 313


>AF039719-3|AAB96756.1|  730|Caenorhabditis elegans Blistered
           cuticle protein 4, isoformb protein.
          Length = 730

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = -1

Query: 534 SSTSGTTQGWSDRVSELTRVDDELIDKIQ 448
           S+T  T+QG   RV +LT   DE++++I+
Sbjct: 638 SATPATSQGVLSRVHQLTSQGDEVVERIR 666


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,325,102
Number of Sequences: 27780
Number of extensions: 331728
Number of successful extensions: 1221
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1221
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)