Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20d06
         (412 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y10199-1|CAA71260.1|  137|Homo sapiens T cell receptor beta chai...    29   6.0  
S63251-1|AAD13941.1|   79|Homo sapiens T-cell receptor beta chai...    29   7.9  
AK027667-1|BAB55279.1|  197|Homo sapiens protein ( Homo sapiens ...    29   7.9  

>Y10199-1|CAA71260.1|  137|Homo sapiens T cell receptor beta chain
           protein.
          Length = 137

 Score = 29.1 bits (62), Expect = 6.0
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = -1

Query: 280 EKKSFNLLITIS*KKPDSFFVCLS*TRSCIIHPIGMNLDAILAVTRFLS 134
           +K+SF L +T + K P +F++C S  R     P+       L VT  L+
Sbjct: 89  KKESFPLTVTSAQKNPTAFYLCASSIRDGYNSPLHFGNGTRLTVTEDLN 137


>S63251-1|AAD13941.1|   79|Homo sapiens T-cell receptor beta chains
           protein.
          Length = 79

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -1

Query: 310 VPNIYIRYKIEKKSFNLLITIS*KKPDSFFVCLS 209
           VP  Y   + +K+SF L +T + K P +F++C S
Sbjct: 7   VPEGYSVSREKKESFPLTVTSAQKNPTAFYLCAS 40


>AK027667-1|BAB55279.1|  197|Homo sapiens protein ( Homo sapiens
           cDNA FLJ14761 fis, clone NT2RP3003302. ).
          Length = 197

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +2

Query: 221 KETVRFFLRYCN**VKTFFFYFITNVNIRYFMICV 325
           K +  FFL  C   +  +FF F+ NVN   FMIC+
Sbjct: 26  KRSFTFFLS-C---IPRYFFLFVANVNESSFMICL 56


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 44,958,705
Number of Sequences: 237096
Number of extensions: 796722
Number of successful extensions: 2011
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2011
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3030544982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)