Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20d06
         (412 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF045639-5|AAC02569.2|  937|Caenorhabditis elegans Osmotic avoid...    26   9.2  
AF031408-1|AAB87064.1|  937|Caenorhabditis elegans olfactory cha...    26   9.2  

>AF045639-5|AAC02569.2|  937|Caenorhabditis elegans Osmotic
           avoidance abnormal protein9 protein.
          Length = 937

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +1

Query: 103 IPRDFLTFIMKTETL*LPKLHRDSSQWDE*CKNAFRTNTQRNC 231
           I    + +I  TE   LP+L+ +  QWD+  + A    T  NC
Sbjct: 403 ITLSIVVYIRPTE---LPRLYMEDPQWDDYIRTACELLTILNC 442


>AF031408-1|AAB87064.1|  937|Caenorhabditis elegans olfactory
           channel protein.
          Length = 937

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +1

Query: 103 IPRDFLTFIMKTETL*LPKLHRDSSQWDE*CKNAFRTNTQRNC 231
           I    + +I  TE   LP+L+ +  QWD+  + A    T  NC
Sbjct: 403 ITLSIVVYIRPTE---LPRLYMEDPQWDDYIRTACELLTILNC 442


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,630,280
Number of Sequences: 27780
Number of extensions: 147191
Number of successful extensions: 272
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 272
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)