Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20d06
         (412 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   2.4  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   2.4  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          20   9.5  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 292 RYKIEKKSFNLLITIS*KKP 233
           +Y++  K FN  ITI+  KP
Sbjct: 492 QYRLNHKPFNFHITINADKP 511



 Score = 21.8 bits (44), Expect = 3.1
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -1

Query: 358 IVYLRNYHLH*YTNHKVPNIYIRYKIEKKSFNLLIT 251
           I Y  +Y +H    +K   IY   KIE  + + LIT
Sbjct: 426 IDYYHSYKMHQKPYNKDEIIYPNLKIESFTVDKLIT 461


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 292 RYKIEKKSFNLLITIS*KKP 233
           +Y++  K FN  ITI+  KP
Sbjct: 492 QYRLNHKPFNFHITINADKP 511



 Score = 21.8 bits (44), Expect = 3.1
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -1

Query: 358 IVYLRNYHLH*YTNHKVPNIYIRYKIEKKSFNLLIT 251
           I Y  +Y +H    +K   IY   KIE  + + LIT
Sbjct: 426 IDYYHSYKMHQKPYNKDEIIYPNLKIESFTVDKLIT 461


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 6/24 (25%), Positives = 12/24 (50%)
 Frame = -3

Query: 194 HYSSHWDESRCNFGSYKVSVFIIN 123
           +YS +W +        K S+ ++N
Sbjct: 262 NYSMYWGQGHAILKGLKTSIILMN 285


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,446
Number of Sequences: 438
Number of extensions: 2022
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10379628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)