Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt20d02
(670 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A12.17c |cys12|cys1b|cysteine synthase Cys12|Schizosaccharo... 117 1e-27
SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces po... 109 5e-25
SPBC1703.13c |||inorganic phosphate transporter |Schizosaccharom... 29 0.46
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 29 0.61
SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr 3... 29 0.80
SPCC320.14 ||SPCC330.15c|threo-3-hydroxyaspartate ammonia-lyase ... 27 2.4
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p... 26 5.6
SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces pomb... 26 5.6
SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces po... 25 7.5
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 25 9.9
>SPAC3A12.17c |cys12|cys1b|cysteine synthase
Cys12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 395
Score = 117 bits (282), Expect = 1e-27
Identities = 73/198 (36%), Positives = 107/198 (54%), Gaps = 5/198 (2%)
Frame = +3
Query: 84 NSVDNEIKASALDLIGNTPIVALDRLHPGPG-RILAKCEFMNPGASIKCRSSLCMIKKAL 260
+S++ +I LIGNT +V + L G ILAK EF+NPG S K R +L MI+ A
Sbjct: 36 DSLEEDIVNGVEGLIGNTKMVRIKSLSQATGCDILAKAEFLNPGNSPKDRVALQMIRTAE 95
Query: 261 ASGELKPKEP--VVEVTSGNQGCGLAVVCAVLGHPLTLAMSKGNSAQRAIHMEALGAKCV 434
+G+L P + V E T+G+ G +A++C LG+ + M S +++ +E LGA
Sbjct: 96 ENGDLVPYQSNAVYEGTAGSTGISIAMLCCSLGYDSRIYMPSDQSKEKSDILELLGAHVQ 155
Query: 435 RVPQVEGTYGNVTLNDVK--AVEEVGLRIVKETGAYYVNQFNNDANSESHYQTTGPXIWR 608
RV N +N + A + G Y+ NQF N AN ++H+ +TGP IWR
Sbjct: 156 RVTPAPIVDPNHFVNTARRNAANHTVDESIPGKG-YFANQFENPANWQAHFNSTGPEIWR 214
Query: 609 QTGHRVDAFVATVGTAGT 662
Q ++DAF+A GT GT
Sbjct: 215 QCAGKLDAFIAGSGTGGT 232
>SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 351
Score = 109 bits (261), Expect = 5e-25
Identities = 66/189 (34%), Positives = 95/189 (50%), Gaps = 1/189 (0%)
Frame = +3
Query: 102 IKASALDLIGNTPIVALDRLHPGPG-RILAKCEFMNPGASIKCRSSLCMIKKALASGELK 278
I + + IG TP++ L+ L G ILAK EF NPG S+K R++ +++ A G+L
Sbjct: 13 IVSGFIGAIGRTPLIRLNTLSNETGCNILAKAEFQNPGGSVKDRAAYYVVRDAEKKGKLS 72
Query: 279 PKEPVVEVTSGNQGCGLAVVCAVLGHPLTLAMSKGNSAQRAIHMEALGAKCVRVPQVEGT 458
+VE T+GN G GLA + G+ + M S + ++ LGA+ VP +
Sbjct: 73 RGGTIVEGTAGNTGIGLAHIARARGYKCVIYMPNTQSQAKIDTLKFLGAEVHPVPVAPFS 132
Query: 459 YGNVTLNDVKAVEEVGLRIVKETGAYYVNQFNNDANSESHYQTTGPXIWRQTGHRVDAFV 638
N + + A + +QF+N AN SHY+TTGP IW QT VD F
Sbjct: 133 ------NPLNYNHQARRHAESTPNASWTDQFDNVANLLSHYETTGPEIWDQTKGTVDGFT 186
Query: 639 ATVGTAGTF 665
+ GT GTF
Sbjct: 187 CSTGTGGTF 195
>SPBC1703.13c |||inorganic phosphate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 311
Score = 29.5 bits (63), Expect = 0.46
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +3
Query: 333 VVCAVLGHPLTLAMSKGNSAQRAIHMEALGAKCVRVPQVEGTYG 464
V+CA++ HP + +SK NS ++A E GA R+ + G G
Sbjct: 233 VLCAIISHPADVMVSKLNSNKKA--GEGAGAAAARIYKEIGFSG 274
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 29.1 bits (62), Expect = 0.61
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +3
Query: 273 LKPKEPVVEVTSGNQGCGLAVVCAVLGHPLTLAMSKGNSAQRAIHMEALGAK 428
L KEPV+ V G+ GCG VC +L L + N+ Q + + +GA+
Sbjct: 1183 LLAKEPVLLV--GDTGCGKTTVCQILAECLHKELHIINAHQDTENGDIIGAQ 1232
>SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 437
Score = 28.7 bits (61), Expect = 0.80
Identities = 18/45 (40%), Positives = 24/45 (53%)
Frame = -1
Query: 400 AL*ALFPFDMASVSG*PNTAHTTASPHP*FPDVTSTTGSLGFSSP 266
AL +L+P + SG + TT + P V ST+GS FSSP
Sbjct: 23 ALRSLWPPPSLNESGDTRSVWTTHTGEPVASSVLSTSGSNNFSSP 67
>SPCC320.14 ||SPCC330.15c|threo-3-hydroxyaspartate ammonia-lyase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 323
Score = 27.1 bits (57), Expect = 2.4
Identities = 17/65 (26%), Positives = 29/65 (44%)
Frame = +3
Query: 180 ILAKCEFMNPGASIKCRSSLCMIKKALASGELKPKEPVVEVTSGNQGCGLAVVCAVLGHP 359
+ KCE + K R +L + + E + K V+ +SGN +A+ +LG P
Sbjct: 43 VFFKCENFQKMGAFKFRGALNALSQL---NEAQRKAGVLTFSSGNHAQAIALSAKILGIP 99
Query: 360 LTLAM 374
+ M
Sbjct: 100 AKIIM 104
>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1040
Score = 25.8 bits (54), Expect = 5.6
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = +3
Query: 69 AMANNNSVDNEIKASALDLIGNTPIVALDRLHPGPGRILAKCEFMNPGASIKCRSSLCM 245
+ N + +K + L+ T I+ D+L P GR++ EF S+K SS+ +
Sbjct: 729 SFTENERCEKVLKINESSLLVGTSIIEQDKLVPVNGRLIL-LEFEKELQSLKVVSSMVL 786
>SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 600
Score = 25.8 bits (54), Expect = 5.6
Identities = 24/109 (22%), Positives = 46/109 (42%), Gaps = 1/109 (0%)
Frame = +3
Query: 102 IKASALDLIGNTPIVALDRLHPGPG-RILAKCEFMNPGASIKCRSSLCMIKKALASGELK 278
+ ++ ++I TP+ + G + K E + P S K R + K + +
Sbjct: 103 LTSNVYEVIKETPLTKGVVISESTGVPVYLKREDLTPVFSFKIRGAH---NKMASLDKQS 159
Query: 279 PKEPVVEVTSGNQGCGLAVVCAVLGHPLTLAMSKGNSAQRAIHMEALGA 425
K V+ ++GN G+A LG T+ M + + +++ LGA
Sbjct: 160 LKNGVIACSAGNHAQGVAYSARTLGVKATIVMPQNTPEIKWRNVKRLGA 208
>SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 230
Score = 25.4 bits (53), Expect = 7.5
Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 1/77 (1%)
Frame = +3
Query: 204 NPGA-SIKCRSSLCMIKKALASGELKPKEPVVEVTSGNQGCGLAVVCAVLGHPLTLAMSK 380
NP A + C +++ A G + + ++ A+ +P+ L M++
Sbjct: 40 NPAALPLPCLEKTMLVRSFDAQGLKDAVDELESNLKSSEDQAYALCIDSFSNPIGLLMAQ 99
Query: 381 GNSAQRAIHMEALGAKC 431
GN + M LG KC
Sbjct: 100 GNISFAHAFMMTLGRKC 116
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 25.0 bits (52), Expect = 9.9
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +3
Query: 63 SCAMANNNSVDNEIKASALDLIGNTPIVALDRLHP 167
SCA+ NN + D E K A ++ N+ ++ P
Sbjct: 959 SCAVLNNQNSDLEEKKQAFQMVKNSYLLLFASAKP 993
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,802,275
Number of Sequences: 5004
Number of extensions: 59636
Number of successful extensions: 168
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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