Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20d02
         (670 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...   112   3e-27
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.1  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   4.6  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   4.6  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   8.0  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score =  112 bits (270), Expect = 3e-27
 Identities = 69/194 (35%), Positives = 103/194 (53%), Gaps = 4/194 (2%)
 Frame = +3

Query: 99  EIKASALDLIGNTPIVALDRLHPGPG---RILAKCEFMNPGASIKCRSSLCMIKKALASG 269
           +I    L  IG TP++ L+ +    G    I AKCEF+NPG S+K R +  MI+ A   G
Sbjct: 34  KIMPDILTAIGQTPLIKLNNIPKSYGIKCEIYAKCEFLNPGGSVKDRIAYRMIQDAEDKG 93

Query: 270 ELKPKEPVVEVTSGNQGCGLAVVCAVLGHPLTLAMSKGNSAQRAIHMEALGAKCVRVPQV 449
            LKP   ++E TSGN G GLA+  AV G+   + M +  S ++   + ALGAK +R P  
Sbjct: 94  LLKPGCTIIEPTSGNTGIGLAMAAAVRGYKCIIVMPEKMSDEKISTLYALGAKIIRTP-T 152

Query: 450 EGTYGNVTLNDVKAVEEVGLRIVKE-TGAYYVNQFNNDANSESHYQTTGPXIWRQTGHRV 626
           E ++     +  +A   V  ++ KE   +  ++Q+ N  N  +HY  T   IW+Q   ++
Sbjct: 153 EASW-----HSPEAHISVAQKLQKEIPNSIILDQYTNPGNPLAHYDQTAIEIWKQCEGKI 207

Query: 627 DAFVATVGTAGTFT 668
           D  VA  GT GT +
Sbjct: 208 DYLVAGAGTGGTIS 221


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 12/19 (63%), Positives = 12/19 (63%)
 Frame = +2

Query: 185  GEM*VHEPGSIY*VPVITL 241
            GEM VH  GS Y VP  TL
Sbjct: 1058 GEMSVHRAGSYYGVPHSTL 1076



 Score = 23.8 bits (49), Expect = 1.5
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +2

Query: 125 HRQY-AYSSARSPSPWPRKDLGEM*VHEPGS 214
           HR Y A+SS+  P P   + +G   +H P S
Sbjct: 69  HRLYPAFSSSCDPVPGNLEQIGSRPLHPPAS 99


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 395 KGHTYGGSRGQMRKSSASGRHVRKRD 472
           +GH  GGSRG+      +G + + +D
Sbjct: 84  RGHGKGGSRGRGGNRGRTGFNNKNKD 109


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 287 ASCGSDIGKSRMWARRRVCCIG 352
           AS  +DIG S+  A +  CC G
Sbjct: 792 ASFHTDIGNSQSLAHQDQCCPG 813


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 10/29 (34%), Positives = 12/29 (41%)
 Frame = -1

Query: 505 PTSSTAFTSFKVTFPYVPSTCGTLTHLAP 419
           PT    + SFK     V   C  L  +AP
Sbjct: 158 PTDDEPYASFKAMEDSVGGKCEVLYDIAP 186


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,852
Number of Sequences: 438
Number of extensions: 4060
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)