Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20d01
         (681 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY509035-1|AAS91662.1| 1386|Homo sapiens roundabout-like protein...    33   0.94 
AK056544-1|BAB71212.1| 1034|Homo sapiens protein ( Homo sapiens ...    33   0.94 
BC068223-1|AAH68223.1|  195|Homo sapiens SSH2 protein protein.         31   5.0  
BC011636-1|AAH11636.2|  178|Homo sapiens SSH2 protein protein.         31   5.0  
BC008941-1|AAH08941.1|  195|Homo sapiens SSH2 protein protein.         31   5.0  
AB072359-1|BAB84118.1|  195|Homo sapiens hSSH-2A protein.              31   5.0  
AB018288-1|BAA34465.1|  909|Homo sapiens KIAA0745 protein protein.     30   8.8  

>AY509035-1|AAS91662.1| 1386|Homo sapiens roundabout-like protein 3
            protein.
          Length = 1386

 Score = 33.1 bits (72), Expect = 0.94
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 579  ATTWPSESTASIVSEPSGTCSPAKYDKDNLFY 674
            A +WP  S +    EP G+C P+  D D+ +Y
Sbjct: 963  ADSWPHPSRSPSAQEPRGSCCPSNPDPDDRYY 994


>AK056544-1|BAB71212.1| 1034|Homo sapiens protein ( Homo sapiens cDNA
            FLJ31982 fis, clone NT2RP7008550, highly similar to Mus
            musculus rig-1 protein mRNA. ).
          Length = 1034

 Score = 33.1 bits (72), Expect = 0.94
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 579  ATTWPSESTASIVSEPSGTCSPAKYDKDNLFY 674
            A +WP  S +    EP G+C P+  D D+ +Y
Sbjct: 963  ADSWPHPSRSPSAQEPRGSCCPSNPDPDDRYY 994


>BC068223-1|AAH68223.1|  195|Homo sapiens SSH2 protein protein.
          Length = 195

 Score = 30.7 bits (66), Expect = 5.0
 Identities = 18/45 (40%), Positives = 27/45 (60%)
 Frame = -3

Query: 643 GLQVPLGSETIDAVDSEGHVVAVRVSTDSQYQILVTLSVQDLEVD 509
           GL +PL S+T+  +D +G      VSTD++  I   +SVQ + VD
Sbjct: 139 GLVLPLWSDTLIHLDGDG---GFSVSTDNRVHIFKPVSVQAMWVD 180


>BC011636-1|AAH11636.2|  178|Homo sapiens SSH2 protein protein.
          Length = 178

 Score = 30.7 bits (66), Expect = 5.0
 Identities = 18/45 (40%), Positives = 27/45 (60%)
 Frame = -3

Query: 643 GLQVPLGSETIDAVDSEGHVVAVRVSTDSQYQILVTLSVQDLEVD 509
           GL +PL S+T+  +D +G      VSTD++  I   +SVQ + VD
Sbjct: 122 GLVLPLWSDTLIHLDGDG---GFSVSTDNRVHIFKPVSVQAMWVD 163


>BC008941-1|AAH08941.1|  195|Homo sapiens SSH2 protein protein.
          Length = 195

 Score = 30.7 bits (66), Expect = 5.0
 Identities = 18/45 (40%), Positives = 27/45 (60%)
 Frame = -3

Query: 643 GLQVPLGSETIDAVDSEGHVVAVRVSTDSQYQILVTLSVQDLEVD 509
           GL +PL S+T+  +D +G      VSTD++  I   +SVQ + VD
Sbjct: 139 GLVLPLWSDTLIHLDGDG---GFSVSTDNRVHIFKPVSVQAMWVD 180


>AB072359-1|BAB84118.1|  195|Homo sapiens hSSH-2A protein.
          Length = 195

 Score = 30.7 bits (66), Expect = 5.0
 Identities = 18/45 (40%), Positives = 27/45 (60%)
 Frame = -3

Query: 643 GLQVPLGSETIDAVDSEGHVVAVRVSTDSQYQILVTLSVQDLEVD 509
           GL +PL S+T+  +D +G      VSTD++  I   +SVQ + VD
Sbjct: 139 GLVLPLWSDTLIHLDGDG---GFSVSTDNRVHIFKPVSVQAMWVD 180


>AB018288-1|BAA34465.1|  909|Homo sapiens KIAA0745 protein protein.
          Length = 909

 Score = 29.9 bits (64), Expect = 8.8
 Identities = 14/29 (48%), Positives = 21/29 (72%)
 Frame = +3

Query: 81  LCMLQIPTSLTTFWRSSFTIASSLPITTV 167
           LC +QIPTS    WRS+F  +S+L ++T+
Sbjct: 247 LCTVQIPTS----WRSAFLDSSTLQLSTI 271


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,177,360
Number of Sequences: 237096
Number of extensions: 1726233
Number of successful extensions: 4767
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4767
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7727256732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)