Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20c18
         (672 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom...    28   1.1  
SPCC622.14 |||GTPase activating protein |Schizosaccharomyces pom...    28   1.1  
SPBC14F5.08 |med7||mediator complex subunit Med7|Schizosaccharom...    27   1.9  
SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces pomb...    26   5.7  
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth...    25   9.9  
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz...    25   9.9  

>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 703

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +3

Query: 6   LSIDNTITHHYFCRFRFCDAWREIFTTTRRKYASPTSAVIEFLNYKRG 149
           L+ID TI HHY C       W+++F T  + Y  P + +    N  RG
Sbjct: 472 LTIDVTIMHHYACH-----VWQKLFET--QWYEYPVNVMNRVNNALRG 512


>SPCC622.14 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 309

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/38 (31%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = +1

Query: 436 EKLSDV-DPQKVNKFIEFLKRFSANLKEGVQDAKKQLK 546
           +++ DV DP+    ++  +  FS+N++EG + +  QLK
Sbjct: 224 QQIQDVQDPETRKDYMNAINNFSSNVQEGAKQSFTQLK 261


>SPBC14F5.08 |med7||mediator complex subunit
           Med7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +2

Query: 200 KHDQLKQFELLRTQLRLKRELLQKYRNM 283
           KH++  Q ELLRT  R   E L+KY+++
Sbjct: 292 KHEE-SQVELLRTHNRQMTETLEKYKSL 318


>SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 424

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 421 FYRGKEKLSDVDPQKVNKFIEFLKR 495
           F+R K KLS V+P  +   + F K+
Sbjct: 203 FFREKVKLSTVEPSAIKNLVLFAKK 227


>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
            Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1323

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +1

Query: 298  IIQVKMPLRALLKYLANNERIVQKIAES-YPVRRAAQLAV 414
            I  V+ P    L  + + ER+V K+A S YP  +A++  V
Sbjct: 1268 IAGVRSPCGRFLAMMPHPERVVLKVANSYYPHSKASEWGV 1307


>SPCC794.08 |||HEAT repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 798

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 13/40 (32%), Positives = 17/40 (42%)
 Frame = +3

Query: 3   LLSIDNTITHHYFCRFRFCDAWREIFTTTRRKYASPTSAV 122
           LL     +T H +    F D WREI T    + +S    V
Sbjct: 395 LLVCITCLTKHQYYDEEFADVWREIDTLANSETSSAIQMV 434


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,401,046
Number of Sequences: 5004
Number of extensions: 43298
Number of successful extensions: 111
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)