Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20c18
         (672 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC112029-1|AAI12030.1|  146|Homo sapiens mediator complex subuni...    50   6e-06
BC104988-1|AAI04989.1|  146|Homo sapiens mediator complex subuni...    50   6e-06
AK001055-1|BAA91483.1|  146|Homo sapiens protein ( Homo sapiens ...    50   6e-06
BC062368-1|AAH62368.1|   99|Homo sapiens LOC152217 protein protein.    36   0.17 
AL139421-3|CAI22510.1| 1044|Homo sapiens coiled-coil domain cont...    31   5.0  
AL139421-1|CAI22508.1| 1454|Homo sapiens coiled-coil domain cont...    31   5.0  
AK126045-1|BAC86410.1|  978|Homo sapiens galactosaminyltransfera...    31   5.0  
BC025970-1|AAH25970.1|  286|Homo sapiens HEXIM2 protein protein.       30   8.7  
BC012474-1|AAH12474.1|  286|Homo sapiens hexamthylene bis-acetam...    30   8.7  
BC003531-1|AAH03531.1|  286|Homo sapiens HEXIM2 protein protein.       30   8.7  
AY598322-1|AAT06733.1|  286|Homo sapiens L3 protein.                   30   8.7  
AK056946-1|BAB71319.1|  286|Homo sapiens protein ( Homo sapiens ...    30   8.7  

>BC112029-1|AAI12030.1|  146|Homo sapiens mediator complex subunit 9
           protein.
          Length = 146

 Score = 50.4 bits (115), Expect = 6e-06
 Identities = 23/65 (35%), Positives = 38/65 (58%)
 Frame = +2

Query: 101 RESHECSHRVLELQKRLEIAKAQIRRLPGIEFNKHDQLKQFELLRTQLRLKRELLQKYRN 280
           ++S E    +  L+ + +  +  I  +PGI  +   Q +Q + LR Q+R K ELLQKY++
Sbjct: 78  KDSPEVHQDLNALKSKFQEMRKLISTMPGIHLSPEQQQQQLQSLREQVRTKNELLQKYKS 137

Query: 281 MCSFE 295
           +C FE
Sbjct: 138 LCMFE 142


>BC104988-1|AAI04989.1|  146|Homo sapiens mediator complex subunit 9
           protein.
          Length = 146

 Score = 50.4 bits (115), Expect = 6e-06
 Identities = 23/65 (35%), Positives = 38/65 (58%)
 Frame = +2

Query: 101 RESHECSHRVLELQKRLEIAKAQIRRLPGIEFNKHDQLKQFELLRTQLRLKRELLQKYRN 280
           ++S E    +  L+ + +  +  I  +PGI  +   Q +Q + LR Q+R K ELLQKY++
Sbjct: 78  KDSPEVHQDLNALKSKFQEMRKLISTMPGIHLSPEQQQQQLQSLREQVRTKNELLQKYKS 137

Query: 281 MCSFE 295
           +C FE
Sbjct: 138 LCMFE 142


>AK001055-1|BAA91483.1|  146|Homo sapiens protein ( Homo sapiens
           cDNA FLJ10193 fis, clone HEMBA1004763. ).
          Length = 146

 Score = 50.4 bits (115), Expect = 6e-06
 Identities = 23/65 (35%), Positives = 38/65 (58%)
 Frame = +2

Query: 101 RESHECSHRVLELQKRLEIAKAQIRRLPGIEFNKHDQLKQFELLRTQLRLKRELLQKYRN 280
           ++S E    +  L+ + +  +  I  +PGI  +   Q +Q + LR Q+R K ELLQKY++
Sbjct: 78  KDSPEVHQDLNALKSKFQEMRKLISTMPGIHLSPEQQQQQLQSLREQVRTKNELLQKYKS 137

Query: 281 MCSFE 295
           +C FE
Sbjct: 138 LCMFE 142


>BC062368-1|AAH62368.1|   99|Homo sapiens LOC152217 protein protein.
          Length = 99

 Score = 35.5 bits (78), Expect = 0.17
 Identities = 16/32 (50%), Positives = 25/32 (78%)
 Frame = +1

Query: 313 MPLRALLKYLANNERIVQKIAESYPVRRAAQL 408
           M LR LL  L ++ ++V++++ES P+RRAAQL
Sbjct: 1   MVLRRLLAALLHSPQLVERLSESRPIRRAAQL 32


>AL139421-3|CAI22510.1| 1044|Homo sapiens coiled-coil domain
           containing 18 protein.
          Length = 1044

 Score = 30.7 bits (66), Expect = 5.0
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +2

Query: 104 ESHECSHRVLELQKRLEIAKAQIRRLPGIEFNKHDQLKQF--ELLRTQLRLK 253
           E  EC+ ++  L  +L+ AK Q+R    I      ++ Q   E+ RTQ R+K
Sbjct: 804 ELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMK 855


>AL139421-1|CAI22508.1| 1454|Homo sapiens coiled-coil domain
            containing 18 protein.
          Length = 1454

 Score = 30.7 bits (66), Expect = 5.0
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +2

Query: 104  ESHECSHRVLELQKRLEIAKAQIRRLPGIEFNKHDQLKQF--ELLRTQLRLK 253
            E  EC+ ++  L  +L+ AK Q+R    I      ++ Q   E+ RTQ R+K
Sbjct: 1058 ELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMK 1109


>AK126045-1|BAC86410.1|  978|Homo sapiens galactosaminyltransferase
           9  protein.
          Length = 978

 Score = 30.7 bits (66), Expect = 5.0
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +2

Query: 104 ESHECSHRVLELQKRLEIAKAQIRRLPGIEFNKHDQLKQF--ELLRTQLRLK 253
           E  EC+ ++  L  +L+ AK Q+R    I      ++ Q   E+ RTQ R+K
Sbjct: 738 ELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMK 789


>BC025970-1|AAH25970.1|  286|Homo sapiens HEXIM2 protein protein.
          Length = 286

 Score = 29.9 bits (64), Expect = 8.7
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = +2

Query: 77  FHDNASKIRESHECSHRVLELQKRLEIAKAQIRRLPGIEFNKHDQ-LKQFELLRTQLRLK 253
           FH  + + R   E     LEL+KRL  A+ + RRL  ++     Q  +Q E L  +++  
Sbjct: 200 FHTESLQGRSKQELVRDYLELEKRLSQAEEETRRLQQLQACTGQQSCRQVEELAAEVQRL 259

Query: 254 RELLQKYR 277
           R   Q+ R
Sbjct: 260 RTENQRLR 267


>BC012474-1|AAH12474.1|  286|Homo sapiens hexamthylene bis-acetamide
           inducible 2 protein.
          Length = 286

 Score = 29.9 bits (64), Expect = 8.7
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = +2

Query: 77  FHDNASKIRESHECSHRVLELQKRLEIAKAQIRRLPGIEFNKHDQ-LKQFELLRTQLRLK 253
           FH  + + R   E     LEL+KRL  A+ + RRL  ++     Q  +Q E L  +++  
Sbjct: 200 FHTESLQGRSKQELVRDYLELEKRLSQAEEETRRLQQLQACTGQQSCRQVEELAAEVQRL 259

Query: 254 RELLQKYR 277
           R   Q+ R
Sbjct: 260 RTENQRLR 267


>BC003531-1|AAH03531.1|  286|Homo sapiens HEXIM2 protein protein.
          Length = 286

 Score = 29.9 bits (64), Expect = 8.7
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = +2

Query: 77  FHDNASKIRESHECSHRVLELQKRLEIAKAQIRRLPGIEFNKHDQ-LKQFELLRTQLRLK 253
           FH  + + R   E     LEL+KRL  A+ + RRL  ++     Q  +Q E L  +++  
Sbjct: 200 FHTESLQGRSKQELVRDYLELEKRLSQAEEETRRLQQLQACTGQQSCRQVEELAAEVQRL 259

Query: 254 RELLQKYR 277
           R   Q+ R
Sbjct: 260 RTENQRLR 267


>AY598322-1|AAT06733.1|  286|Homo sapiens L3 protein.
          Length = 286

 Score = 29.9 bits (64), Expect = 8.7
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = +2

Query: 77  FHDNASKIRESHECSHRVLELQKRLEIAKAQIRRLPGIEFNKHDQ-LKQFELLRTQLRLK 253
           FH  + + R   E     LEL+KRL  A+ + RRL  ++     Q  +Q E L  +++  
Sbjct: 200 FHTESLQGRSKQELVRDYLELEKRLSQAEEETRRLQQLQACTGQQSCRQVEELAAEVQRL 259

Query: 254 RELLQKYR 277
           R   Q+ R
Sbjct: 260 RTENQRLR 267


>AK056946-1|BAB71319.1|  286|Homo sapiens protein ( Homo sapiens
           cDNA FLJ32384 fis, clone SKMUS1000104, weakly similar to
           Homo sapiens mRNA for HEXIM1 protein, complete cds. ).
          Length = 286

 Score = 29.9 bits (64), Expect = 8.7
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = +2

Query: 77  FHDNASKIRESHECSHRVLELQKRLEIAKAQIRRLPGIEFNKHDQ-LKQFELLRTQLRLK 253
           FH  + + R   E     LEL+KRL  A+ + RRL  ++     Q  +Q E L  +++  
Sbjct: 200 FHTESLQGRSKQELVRDYLELEKRLSQAEEETRRLQQLQACTGQQSCRQVEELAAEVQRL 259

Query: 254 RELLQKYR 277
           R   Q+ R
Sbjct: 260 RTENQRLR 267


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,962,435
Number of Sequences: 237096
Number of extensions: 1333781
Number of successful extensions: 3719
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3719
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7647512560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)