Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt20c17
(584 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch... 162 3e-41
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo... 161 9e-41
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb... 29 0.38
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 29 0.50
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb... 29 0.66
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 28 0.87
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 27 1.5
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 27 2.7
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po... 26 3.5
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 26 3.5
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 26 3.5
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa... 26 4.7
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 26 4.7
SPAC140.04 |||conserved fungal protein|Schizosaccharomyces pombe... 26 4.7
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual 25 6.2
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 25 6.2
SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|... 25 6.2
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p... 25 8.1
SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces pom... 25 8.1
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce... 25 8.1
>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 294
Score = 162 bits (394), Expect = 3e-41
Identities = 79/169 (46%), Positives = 111/169 (65%), Gaps = 2/169 (1%)
Frame = +1
Query: 10 YTGTTDVTGDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIK 189
Y G T+ G+ E +++GP F+ +LDVGL RT+TG+RVFGAMKGA DGGL +PHS
Sbjct: 119 YEGVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGASDGGLFIPHSPN 178
Query: 190 RFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIKLGVTADAIEA 369
RFPG+D E+++ + E R +I+G HVAEYM L DDE+ +++QFS I G+ +D +E
Sbjct: 179 RFPGFDIETEELDDETLRKYIYGGHVAEYMEMLIDDDEERYQKQFSGLIADGIESDQLED 238
Query: 370 IYKKAHEAIRADPSHKK--KELKKDSVKQKRWNKRKLTLAERKNRIKQK 510
IY +A+ IR DPS +K K+ + ++ +RKLT ERK R K
Sbjct: 239 IYAEAYAKIREDPSFQKSGKDAAAFKAESLKYTQRKLTAEERKERFNAK 287
>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 294
Score = 161 bits (390), Expect = 9e-41
Identities = 79/169 (46%), Positives = 110/169 (65%), Gaps = 2/169 (1%)
Frame = +1
Query: 10 YTGTTDVTGDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIK 189
Y G T+ G+ E +++GP F+ +LDVGL RT+TG+RVFGAMKGA DGGL +PHS
Sbjct: 119 YEGVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGASDGGLFIPHSPN 178
Query: 190 RFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIKLGVTADAIEA 369
RFPG+D E+++ + E R +I+G HVAEYM L DDE+ +++QFS I G+ +D +E
Sbjct: 179 RFPGFDIETEELDDETLRKYIYGGHVAEYMEMLIDDDEERYQKQFSGLIADGIESDQLED 238
Query: 370 IYKKAHEAIRADPSHKK--KELKKDSVKQKRWNKRKLTLAERKNRIKQK 510
IY +A+ IR DPS +K K+ + + +RKLT ERK R K
Sbjct: 239 IYAEAYAKIREDPSFQKSGKDAAAFKAESLKHTQRKLTAEERKERFNAK 287
>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 508
Score = 29.5 bits (63), Expect = 0.38
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = +1
Query: 361 IEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKAS 519
IE KK+ + AD KKE K+ K+ + +KRK +E K+KK S
Sbjct: 451 IEKKKKKSSKLKEADGESSKKEKKEKKDKKHKKSKRKSEESEDGESPKKKKKS 503
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 29.1 bits (62), Expect = 0.50
Identities = 17/59 (28%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Frame = +1
Query: 376 KKAHEAIRADPSHKKKELKKDSVKQKRWNKR--KLTLAERKNRIKQKKASFIKRLQAQA 546
+ A E R + + + K LKK + ++KR K+ K AE K R+++++A + K++ ++
Sbjct: 708 RAAQERERKEQAKEAKRLKKLAKEEKRLKKKEEKARKAEEK-RLQKERAKYAKQMSRES 765
>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 497
Score = 28.7 bits (61), Expect = 0.66
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +1
Query: 388 EAIRADPSHKKKELKKDSVKQKRWNKRKL-TLAERKNRIKQKKAS 519
E I PS K+K+ KK+ K+K KR +E + K+KK S
Sbjct: 452 ETISEKPSKKEKKDKKEKKKEKSKKKRSADDASEEVKKSKKKKKS 496
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 28.3 bits (60), Expect = 0.87
Identities = 22/79 (27%), Positives = 38/79 (48%)
Frame = +1
Query: 310 FKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAER 489
F ++ +YIKL A + + + + A P KE+KK K KR T A
Sbjct: 392 FTKEDGEYIKL--IAGVMRSSGCEVPNWVMALPK-PSKEMKKKLKKSPPKRKRITTRASY 448
Query: 490 KNRIKQKKASFIKRLQAQA 546
+ +Q+K +IK+++ +A
Sbjct: 449 DRQKEQRKKEYIKKVKKEA 467
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 27.5 bits (58), Expect = 1.5
Identities = 13/54 (24%), Positives = 29/54 (53%)
Frame = +1
Query: 292 QDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQK 453
+++++S ++ +K ++ V +KK +E IR+D LK+D K++
Sbjct: 1023 KEEKESSSKELAKQLEDAVREKDSALSFKKDYEKIRSDADRVITSLKEDIEKER 1076
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 26.6 bits (56), Expect = 2.7
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +1
Query: 358 AIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRK 471
++E+ K EA + + +KKE KK+ K+K+ K K
Sbjct: 430 SVESSEKDEDEAAKKEEKRRKKEAKKEK-KEKKEKKEK 466
>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 284
Score = 26.2 bits (55), Expect = 3.5
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Frame = +1
Query: 289 EQDDEDSFKRQFSKYIKLGVTADA--IEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWN 462
E+ + S K++ K G D +E I KK + HKKK+ + S K+K +
Sbjct: 166 EKRKKHSSKKKSKKKTSTGSALDPKKLEKITKKKKK------EHKKKDKESSSKKRKSGS 219
Query: 463 KRKLTLAERKNRIKQKKAS 519
K ++K ++K K S
Sbjct: 220 SDKEEKKKKKIKLKDKPES 238
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 26.2 bits (55), Expect = 3.5
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +1
Query: 364 EAIYKKAHEAIRADPSHKKKELKKDSVKQKR-WNKRKLTLAERKNRIKQKKASFIKR 531
EAI + EA RA +EL + QKR +R E K R +++ A ++R
Sbjct: 788 EAIREAEEEAARAAEEEANRELHEQEEAQKRAIEERTRAAREAKEREQREMAEKLER 844
>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 674
Score = 26.2 bits (55), Expect = 3.5
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +1
Query: 349 TADAIEAIYKKAHEAIRADPSHKKKELK 432
TA IEA+YKKA+ I+ D +H K LK
Sbjct: 174 TAQLIEAVYKKAN--IK-DAAHDSKNLK 198
>SPAC19A8.08 |upf2||nonsense-mediated decay protein
Upf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1049
Score = 25.8 bits (54), Expect = 4.7
Identities = 23/101 (22%), Positives = 39/101 (38%)
Frame = +1
Query: 223 FNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRA 402
FNA R+ + A+ D E F + G A+ +IY+ + E IR+
Sbjct: 363 FNASGERSESANVETAQVW----DDREQYFFYEVFPNFNEGSIAEMKSSIYESSQEGIRS 418
Query: 403 DPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFI 525
+ KKE D +K + ++ R + K S +
Sbjct: 419 SSENNKKE---DDLKDSTGDLNTTQVSSRVDNFLLKLPSMV 456
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 25.8 bits (54), Expect = 4.7
Identities = 17/60 (28%), Positives = 33/60 (55%)
Frame = +1
Query: 364 EAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIKRLQAQ 543
EA K+ + ++ + K++EL++ QKR K+K E+K + +Q++A K + Q
Sbjct: 636 EARKKREEQRLKREQEKKQQELER----QKREEKQKQKEREKKLKKQQQEADREKMAREQ 691
>SPAC140.04 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 295
Score = 25.8 bits (54), Expect = 4.7
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = +1
Query: 376 KKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIKR 531
KK +E + SH+K K KRKL + +++ K+ +++ IK+
Sbjct: 27 KKRYEDEKRKISHQKYTDKLLEANDNETTKRKLLVKQKRKSNKEFQSNIIKK 78
>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 978
Score = 25.4 bits (53), Expect = 6.2
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 268 AEYMRSLEQDDEDSFKRQFSKYIK 339
+EY+++L D SFK+ F K+I+
Sbjct: 948 SEYLQALSNLDSRSFKQFFQKFIQ 971
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 25.4 bits (53), Expect = 6.2
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 362 LKPSTRKPMKPSVRIHPTRRK 424
L PS RKP+ V++HP +K
Sbjct: 384 LLPSLRKPLLNFVKVHPPSQK 404
>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 207
Score = 25.4 bits (53), Expect = 6.2
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +1
Query: 376 KKAHEAIRADPSHKKKE--LKKDSVKQKRWNKRKLTLAERKNRIKQKKA 516
KK E A S K+ E KKD+ + ++W+K T + + K+K A
Sbjct: 5 KKRAEKAEAAKSRKQDEEKKKKDAEEDEKWSKGVKTNKKEQEAEKRKAA 53
>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 25.0 bits (52), Expect = 8.1
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +3
Query: 414 QEERVKERLCQTEALEQTQANIGREEKQNQAKEGFLHQE 530
+EER K+ L + E E+ + + E+K + ++ L QE
Sbjct: 133 EEERRKKELMEKEKKEKERIRLIEEQKHKENEQRRLKQE 171
>SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 577
Score = 25.0 bits (52), Expect = 8.1
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +1
Query: 415 KKKELKKDSVKQKRWNKRK 471
KKK+ KK + K+K+ NKRK
Sbjct: 436 KKKKKKKKNNKKKKKNKRK 454
>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 960
Score = 25.0 bits (52), Expect = 8.1
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +1
Query: 403 DPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQK 510
D KK + +K+ ++Q+R KRK L + ++K+K
Sbjct: 89 DNEAKKMKREKEILRQQR-QKRKSELTQLSQKVKEK 123
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,270,923
Number of Sequences: 5004
Number of extensions: 44844
Number of successful extensions: 229
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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