Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20c16
         (634 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    29   0.56 
SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch...    29   0.56 
SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi...    28   1.3  
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   1.7  
SPAPB2B4.06 |||conserved fungal protein|Schizosaccharomyces pomb...    27   1.7  
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S...    27   3.0  
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           25   6.9  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     25   9.1  

>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2280

 Score = 29.1 bits (62), Expect = 0.56
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
 Frame = -3

Query: 338 SGEFLKSIKGSFFISTARRFLFSYNNS------IFLSKLRCRAAINSRTSLEKIVFCNSS 177
           S EFLK++    FI    R+ F+ + S      +FL+  RC A + S T    +V  N  
Sbjct: 621 SREFLKNVYDIEFIYDNTRYRFTASRSSPGSYHLFLNGSRCTAGVRSLTDGGLLVLLNGH 680

Query: 176 SF 171
           S+
Sbjct: 681 SY 682


>SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 775

 Score = 29.1 bits (62), Expect = 0.56
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +1

Query: 115 EKNNYIMVHDVILLQVPLPKLEELQ 189
           EK+N  + HD+++ +V LPK+  LQ
Sbjct: 324 EKDNDFVFHDLVVKEVELPKISPLQ 348


>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
           Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 965

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 15/62 (24%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
 Frame = -3

Query: 335 GEFLKSIKGSFFISTARRFLFSYNNSIFLSKLRCRAAINSRTSL--EKIVFCNS-SSFGS 165
           G  ++ + G   +   R FL+++NN+  L   R + ++ +R S+    + F N+  +FG+
Sbjct: 303 GYIIRILSGEQTVKYDREFLYAHNNTDMLILNRTKDSLEARNSVFHNAVTFANAFMNFGT 362

Query: 164 GT 159
            +
Sbjct: 363 SS 364


>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 17/46 (36%), Positives = 21/46 (45%)
 Frame = -3

Query: 410 SPRSKCLFCNLIGKGAIFQLLSLRSGEFLKSIKGSFFISTARRFLF 273
           SP  KCLF NL+     F L   +     K +  S     ARRFL+
Sbjct: 456 SPAQKCLFSNLLTATRKFCLERQKDDVTFKVLLQSSKAPIARRFLY 501


>SPAPB2B4.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 245

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 14/56 (25%), Positives = 27/56 (48%)
 Frame = +1

Query: 439 VVALNEDVQGIQVDFDDGHCPTWRNQLLAFNNINLAVNGKLQGAPLTITTCPVLMF 606
           V+ +   +Q +++  D    P++R   + FN  N ++   L   P  IT  PV+ +
Sbjct: 73  VLEVENRLQNLKIVKDLRQNPSFRELRMPFNRSNHSLTNNLLSGPGRITVPPVIFY 128


>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
           Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 466 GIQVDFDDGHCPTWRNQLLAFNNINL 543
           G Q  F+    P WR  L+ FN I++
Sbjct: 184 GFQFVFESAIVPNWRKGLITFNKISV 209


>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +1

Query: 211  VLEFIAALHRNFDKKIELLYENRKRRAVEIKNDPFIDFKNSPER 342
            + EF+  LHR F+  I   Y  +  + V    +P I   N P R
Sbjct: 1012 ITEFVKELHRCFEDTISFFYNKKNPKVVTGVFNPRI-LANRPYR 1054


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -3

Query: 353 LLSLRSGEFLKSIKGSFFISTARRFLFSYNNSI 255
           LL + +G F  S+ G F+I   R   F Y++++
Sbjct: 627 LLFIFAGGFAMSVAGVFYILYRRNQAFQYSSTV 659


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,647,432
Number of Sequences: 5004
Number of extensions: 54783
Number of successful extensions: 139
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)