Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20c16
         (634 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0310 - 24301274-24301945,24302035-24302365,24302629-243029...    58   8e-09
04_03_0689 + 18746735-18748296,18748401-18748485                       29   3.1  
02_05_0865 - 32329430-32329642,32329735-32330062,32330136-32330590     29   4.1  
11_03_0071 - 9589669-9590079,9592113-9592334,9592455-9592608,959...    27   9.4  
04_04_1553 - 34363848-34366058,34369087-34370451                       27   9.4  
04_04_1550 - 34332948-34335986                                         27   9.4  

>04_04_0310 -
           24301274-24301945,24302035-24302365,24302629-24302954,
           24303039-24303413
          Length = 567

 Score = 57.6 bits (133), Expect = 8e-09
 Identities = 42/155 (27%), Positives = 66/155 (42%), Gaps = 9/155 (5%)
 Frame = +1

Query: 196 IFSSEVLEFIAALHRNFDKKIELLYENRK--RRAVEIKNDPFIDFKNSPERRDKSWKIAP 369
           I + + L F+A L R F   +    E R+  +R  +    P  D    P R    W  AP
Sbjct: 32  ILTRDSLAFVAGLQREFRGAVRYAMERRREAQRRYDAGELPRFDPATRPVREAGGWACAP 91

Query: 370 LPIRLQNRHLDLGDVSASNTAHFVVALNEDVQGIQVDFDDGHCPTWRNQLLAFNNINLAV 549
           +P  + +R +++    A      + ALN   +    DF+D   PTW N +    N+  AV
Sbjct: 92  VPPAIADRTVEITG-PAEPRKMVINALNSGAKVFMADFEDALSPTWENLMRGQVNLRDAV 150

Query: 550 NGKL------QGAPLTITTCPVLMF-RPRAWNMIE 633
            G +      +G    +   P  +F RPR W++ E
Sbjct: 151 AGTITYRDAARGREYRLGDRPATLFVRPRGWHLPE 185


>04_03_0689 + 18746735-18748296,18748401-18748485
          Length = 548

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 17/63 (26%), Positives = 32/63 (50%)
 Frame = +1

Query: 148 ILLQVPLPKLEELQKTIFSSEVLEFIAALHRNFDKKIELLYENRKRRAVEIKNDPFIDFK 327
           +++ VP P  +E+   + ++E  + I A        I+ ++E+R+RRA       F+ F 
Sbjct: 426 VIVDVPFPLQKEMSAFLANTEKHKDIEACDEVISASIKKIHEHRRRRAF------FLGFS 479

Query: 328 NSP 336
            SP
Sbjct: 480 QSP 482


>02_05_0865 - 32329430-32329642,32329735-32330062,32330136-32330590
          Length = 331

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +1

Query: 397 LDLGDVSASNTAHFVVALNEDVQGIQVDFDDGH 495
           L LG    ++ + F V +  DVQG+QV F DGH
Sbjct: 210 LTLGVAPHTDMSTFTVLVPNDVQGLQV-FKDGH 241


>11_03_0071 -
           9589669-9590079,9592113-9592334,9592455-9592608,
           9592981-9593212,9593303-9593558,9593850-9593870
          Length = 431

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +1

Query: 175 LEELQKTIFSSEVLEFIAALHRNFDKKIELLYENRKRRAVE 297
           L  L  T+F +E L  ++  H+N  K I   YE  K + VE
Sbjct: 23  LPGLNDTVFKNESLNLMSVQHQNIVKLIGYCYET-KNKVVE 62


>04_04_1553 - 34363848-34366058,34369087-34370451
          Length = 1191

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/39 (35%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
 Frame = +1

Query: 487 DGHCPTWRNQLLAFNNINLAVNGKLQGA-PLTITTCPVL 600
           +G+ P    +L +  ++NLA N +L G  PL++++CP+L
Sbjct: 724 NGNIPDVFGKLRSLESLNLASN-QLNGTLPLSLSSCPML 761


>04_04_1550 - 34332948-34335986
          Length = 1012

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/39 (35%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
 Frame = +1

Query: 487 DGHCPTWRNQLLAFNNINLAVNGKLQGA-PLTITTCPVL 600
           +G+ P    +L +  ++NLA N +L G  PL++++CP+L
Sbjct: 256 NGNIPDVFGKLRSLESLNLASN-QLNGTLPLSLSSCPML 293


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,108,062
Number of Sequences: 37544
Number of extensions: 318127
Number of successful extensions: 726
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)