Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt20c16
(634 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 25 0.61
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 25 0.61
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 24 1.1
AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein. 23 2.5
AY569703-1|AAS86656.1| 396|Apis mellifera complementary sex det... 23 3.3
AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex det... 22 4.3
AY569699-1|AAS86652.1| 396|Apis mellifera complementary sex det... 22 4.3
AY569694-1|AAS86647.1| 400|Apis mellifera complementary sex det... 22 4.3
M12598-1|AAA27733.1| 77|Apis mellifera protein ( Bee preprosec... 22 5.7
EF625898-1|ABR45905.1| 686|Apis mellifera hexamerin protein. 21 9.9
EF589162-1|ABQ84439.1| 686|Apis mellifera hexamerin 70c protein. 21 9.9
AY823258-1|AAX18443.1| 145|Apis mellifera pburs protein. 21 9.9
AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein. 21 9.9
AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein. 21 9.9
AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein. 21 9.9
AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein. 21 9.9
AY569713-1|AAS86666.1| 401|Apis mellifera feminizer protein. 21 9.9
AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein. 21 9.9
AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein. 21 9.9
AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex det... 21 9.9
AM420632-1|CAM06632.1| 145|Apis mellifera bursicon subunit beta... 21 9.9
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic
acetylcholine receptor alpha6subunit protein.
Length = 529
Score = 25.0 bits (52), Expect = 0.61
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +2
Query: 5 YYFLRTRTKFRFEYFNTTF 61
+ FLRTRTK + YF+ T+
Sbjct: 26 FSFLRTRTKLQPTYFHHTY 44
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic
acetylcholine receptor alpha6subunit protein.
Length = 529
Score = 25.0 bits (52), Expect = 0.61
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +2
Query: 5 YYFLRTRTKFRFEYFNTTF 61
+ FLRTRTK + YF+ T+
Sbjct: 26 FSFLRTRTKLQPTYFHHTY 44
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 24.2 bits (50), Expect = 1.1
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 3 DIIFFEHERNSDLNISIQLSIKCSCVAFLAVQITY 107
DI+F R L ++ L I C ++FL+V + Y
Sbjct: 225 DIVFNITLRRKTLFYTVNLIIPCVGISFLSVLVFY 259
>AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein.
Length = 898
Score = 23.0 bits (47), Expect = 2.5
Identities = 6/18 (33%), Positives = 12/18 (66%)
Frame = -2
Query: 555 TVHSQIYVVESEKLVPPC 502
++H + Y+ ES + + PC
Sbjct: 65 SIHEESYLAESSRSIDPC 82
>AY569703-1|AAS86656.1| 396|Apis mellifera complementary sex
determiner protein.
Length = 396
Score = 22.6 bits (46), Expect = 3.3
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +1
Query: 379 RLQNRHLDLGDVS-ASNTAHFVVALNEDVQGIQVD 480
R ++R D D S SNT+ V+ N+ +GIQ++
Sbjct: 79 RSKSRSPDSRDRSNTSNTSKTVILSNKGPEGIQIN 113
>AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 22.2 bits (45), Expect = 4.3
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +1
Query: 379 RLQNRHLDLGDVS-ASNTAHFVVALNEDVQGIQVD 480
R ++R D D S ASNT+ V+ ++ +GIQ++
Sbjct: 79 RSKSRSPDSRDRSNASNTSKTVILSDKGPEGIQIN 113
>AY569699-1|AAS86652.1| 396|Apis mellifera complementary sex
determiner protein.
Length = 396
Score = 22.2 bits (45), Expect = 4.3
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +1
Query: 379 RLQNRHLDLGDVS-ASNTAHFVVALNEDVQGIQVD 480
R ++R D D S SNT+ ++ N+ +GIQ++
Sbjct: 79 RSKSRSPDSRDRSNTSNTSKTIILSNKGPEGIQIN 113
>AY569694-1|AAS86647.1| 400|Apis mellifera complementary sex
determiner protein.
Length = 400
Score = 22.2 bits (45), Expect = 4.3
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +1
Query: 379 RLQNRHLDLGDVS-ASNTAHFVVALNEDVQGIQVD 480
R ++R D D S ASNT+ V+ ++ +GIQ++
Sbjct: 79 RSKSRSPDSRDRSNASNTSKTVILSDKGPEGIQIN 113
>M12598-1|AAA27733.1| 77|Apis mellifera protein ( Bee
preprosecapin mRNA, complete cds. ).
Length = 77
Score = 21.8 bits (44), Expect = 5.7
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -3
Query: 278 LFSYNNSIFLSKLRCRAAINSRTSLE 201
LFS+ + + +C A N R SLE
Sbjct: 16 LFSFVVILLIIPSKCEAVSNDRQSLE 41
>EF625898-1|ABR45905.1| 686|Apis mellifera hexamerin protein.
Length = 686
Score = 21.0 bits (42), Expect = 9.9
Identities = 9/32 (28%), Positives = 16/32 (50%)
Frame = -3
Query: 296 STARRFLFSYNNSIFLSKLRCRAAINSRTSLE 201
+ ++FL+ Y +FLS+ +NS E
Sbjct: 76 NVVQKFLWWYKQGMFLSRNAIFTPLNSEQKYE 107
>EF589162-1|ABQ84439.1| 686|Apis mellifera hexamerin 70c protein.
Length = 686
Score = 21.0 bits (42), Expect = 9.9
Identities = 9/32 (28%), Positives = 16/32 (50%)
Frame = -3
Query: 296 STARRFLFSYNNSIFLSKLRCRAAINSRTSLE 201
+ ++FL+ Y +FLS+ +NS E
Sbjct: 76 NVVQKFLWWYKQGMFLSRNAIFTPLNSEQKYE 107
>AY823258-1|AAX18443.1| 145|Apis mellifera pburs protein.
Length = 145
Score = 21.0 bits (42), Expect = 9.9
Identities = 8/26 (30%), Positives = 14/26 (53%)
Frame = +3
Query: 3 DIIFFEHERNSDLNISIQLSIKCSCV 80
D I +E N + I I+ ++C C+
Sbjct: 113 DGIKLMNEENGVMEIKIREPVECKCI 138
>AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.0 bits (42), Expect = 9.9
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +3
Query: 432 SFRSSSQ*GCSRDPSR 479
S+R+ + CSRD SR
Sbjct: 244 SYRNDGERSCSRDRSR 259
>AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.0 bits (42), Expect = 9.9
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +3
Query: 432 SFRSSSQ*GCSRDPSR 479
S+R+ + CSRD SR
Sbjct: 244 SYRNDGERSCSRDRSR 259
>AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.0 bits (42), Expect = 9.9
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +3
Query: 432 SFRSSSQ*GCSRDPSR 479
S+R+ + CSRD SR
Sbjct: 244 SYRNDGERSCSRDRSR 259
>AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.0 bits (42), Expect = 9.9
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +3
Query: 432 SFRSSSQ*GCSRDPSR 479
S+R+ + CSRD SR
Sbjct: 244 SYRNDGERSCSRDRSR 259
>AY569713-1|AAS86666.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.0 bits (42), Expect = 9.9
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +3
Query: 432 SFRSSSQ*GCSRDPSR 479
S+R+ + CSRD SR
Sbjct: 244 SYRNDGERSCSRDRSR 259
>AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.0 bits (42), Expect = 9.9
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +3
Query: 432 SFRSSSQ*GCSRDPSR 479
S+R+ + CSRD SR
Sbjct: 244 SYRNDGERSCSRDRSR 259
>AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein.
Length = 400
Score = 21.0 bits (42), Expect = 9.9
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +3
Query: 432 SFRSSSQ*GCSRDPSR 479
S+R+ + CSRD SR
Sbjct: 244 SYRNDGERSCSRDRSR 259
>AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex
determiner protein.
Length = 401
Score = 21.0 bits (42), Expect = 9.9
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +3
Query: 432 SFRSSSQ*GCSRDPSR 479
S+R+ + CSRD SR
Sbjct: 244 SYRNDGERSCSRDRSR 259
>AM420632-1|CAM06632.1| 145|Apis mellifera bursicon subunit beta
protein precursor protein.
Length = 145
Score = 21.0 bits (42), Expect = 9.9
Identities = 8/26 (30%), Positives = 14/26 (53%)
Frame = +3
Query: 3 DIIFFEHERNSDLNISIQLSIKCSCV 80
D I +E N + I I+ ++C C+
Sbjct: 113 DGIKLMNEENGVMEIKIREPVECKCI 138
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,620
Number of Sequences: 438
Number of extensions: 4139
Number of successful extensions: 22
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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