Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20c12
         (137 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    19   5.4  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    19   5.4  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    19   5.4  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    19   5.4  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    19   5.4  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    19   5.4  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    19   5.4  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    19   5.4  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    19   7.2  

>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 5/16 (31%), Positives = 11/16 (68%)
 Frame = -1

Query: 134 FFWLNLLIRCIFFS*M 87
           +++ NL++ C+  S M
Sbjct: 196 YYFFNLIVPCVLISSM 211


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 5/16 (31%), Positives = 11/16 (68%)
 Frame = -1

Query: 134 FFWLNLLIRCIFFS*M 87
           +++ NL++ C+  S M
Sbjct: 196 YYFFNLIVPCVLISSM 211


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 5/16 (31%), Positives = 11/16 (68%)
 Frame = -1

Query: 134 FFWLNLLIRCIFFS*M 87
           +++ NL++ C+  S M
Sbjct: 196 YYFFNLIVPCVLISSM 211


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 5/16 (31%), Positives = 11/16 (68%)
 Frame = -1

Query: 134 FFWLNLLIRCIFFS*M 87
           +++ NL++ C+  S M
Sbjct: 196 YYFFNLIVPCVLISSM 211


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 5/16 (31%), Positives = 11/16 (68%)
 Frame = -1

Query: 134 FFWLNLLIRCIFFS*M 87
           +++ NL++ C+  S M
Sbjct: 196 YYFFNLIVPCVLISSM 211


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 5/16 (31%), Positives = 11/16 (68%)
 Frame = -1

Query: 134 FFWLNLLIRCIFFS*M 87
           +++ NL++ C+  S M
Sbjct: 196 YYFFNLIVPCVLISSM 211


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 5/16 (31%), Positives = 11/16 (68%)
 Frame = -1

Query: 134 FFWLNLLIRCIFFS*M 87
           +++ NL++ C+  S M
Sbjct: 264 YYFFNLIVPCVLISSM 279


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 5/16 (31%), Positives = 11/16 (68%)
 Frame = -1

Query: 134 FFWLNLLIRCIFFS*M 87
           +++ NL++ C+  S M
Sbjct: 264 YYFFNLIVPCVLISSM 279


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 129 LVKFINKMYFFFI 91
           ++K+IN   FFFI
Sbjct: 6   VIKYINFDRFFFI 18


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.315    0.133    0.356 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,486
Number of Sequences: 438
Number of extensions: 79
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 26
effective length of database: 134,955
effective search space used:  2564145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.8 bits)