Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20c10
         (673 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    60   2e-11
AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding prote...    28   0.070
AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-bind...    28   0.070
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.87 
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    24   1.5  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.1  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 59.7 bits (138), Expect = 2e-11
 Identities = 43/148 (29%), Positives = 77/148 (52%), Gaps = 6/148 (4%)
 Frame = +2

Query: 242 ALVTGCTDGIGKEYAKELAARGCDIVLVSRSLDKLKATAEEIE-KEYKVATKIIQADFSE 418
           ALVTG   GIGK   + L  +G  ++ ++  +DK+K   EE++ K  K+    +Q D S 
Sbjct: 10  ALVTGANSGIGKCLIECLVGKGMKVIGIAPQVDKMKTLVEELKSKPGKLVP--LQCDLSN 67

Query: 419 DD---KIYENIEKEIAGLEIGTLVNNVGVSYTYPEYFLDLPEWDKLIPTLIKANVVAVTK 589
            +   K+ E +EK +  ++I  L+NN  ++        ++ +W K    +   N++ +T 
Sbjct: 68  QNDILKVIEWVEKNLGAIDI--LINNATINIDVTLQNDEVLDWKK----IFDINLLGLTC 121

Query: 590 MTRIVLPEMVKR--EKGVVINIGSASSI 667
           M + VL  M K+    G+++NI  AS +
Sbjct: 122 MIQEVLKLMKKKGINNGIIVNINDASGL 149


>AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding protein
           ASP2 protein.
          Length = 142

 Score = 28.3 bits (60), Expect = 0.070
 Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
 Frame = +2

Query: 290 ELAARGCDIVLVSRSLDKLKATAEEIEKEYKVATKIIQADFSEDDKIYENIEKE-IAGLE 466
           +++  GC    V + ++ LK T   +E  YK+  +++ A  ++D ++ + I  E I   +
Sbjct: 62  DMSQLGCLKACVMKRIEMLKGTELYVEPVYKM-IEVVHAGNADDIQLVKGIANECIENAK 120

Query: 467 IGTLVNNVGVSYT 505
             T   N+G  YT
Sbjct: 121 GETDECNIGNKYT 133


>AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-binding
           protein ASP2 protein.
          Length = 142

 Score = 28.3 bits (60), Expect = 0.070
 Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
 Frame = +2

Query: 290 ELAARGCDIVLVSRSLDKLKATAEEIEKEYKVATKIIQADFSEDDKIYENIEKE-IAGLE 466
           +++  GC    V + ++ LK T   +E  YK+  +++ A  ++D ++ + I  E I   +
Sbjct: 62  DMSQLGCLKACVMKRIEMLKGTELYVEPVYKM-IEVVHAGNADDIQLVKGIANECIENAK 120

Query: 467 IGTLVNNVGVSYT 505
             T   N+G  YT
Sbjct: 121 GETDECNIGNKYT 133


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.6 bits (51), Expect = 0.87
 Identities = 16/47 (34%), Positives = 19/47 (40%)
 Frame = -2

Query: 336 RDRLTRTMSHPRAANSLAYSFPIPSVHPVTSAHFPLDLKSTQCTAGP 196
           RDRLT  M H   A  +A   P  S    T +  P    ST   + P
Sbjct: 334 RDRLTAMMHHLHVAKQMASPEPPKSSESSTGSSIPKLNLSTALMSQP 380



 Score = 22.6 bits (46), Expect = 3.5
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +2

Query: 437 NIEKEIAGLEIGTLVNNVGVSYTYPEYFLDLPEWDKLIP 553
           N+ K +AGL + +  +++  +    E  LD+   DK+ P
Sbjct: 238 NVPKSVAGLNVSSRRSDMNGTTPLDEKPLDVSSNDKVHP 276


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +1

Query: 130 ICCIFYFLLP*ILVAFLVYVR 192
           + CI +FL+P + +A L Y+R
Sbjct: 208 LSCILFFLIPMVFIAVL-YIR 227



 Score = 21.4 bits (43), Expect = 8.1
 Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = -2

Query: 630 FSLFTISGKTMRVIFVTATTLALIRVGMSLSHSGRSKKYSGYV-*ETPTLLTKVPISR 460
           F L+ +S     +I +    +  IR+G+ +     ++   GYV  ET  + ++  I+R
Sbjct: 203 FPLYQLSCILFFLIPMVFIAVLYIRIGLRIQSDSLAENVEGYVHGETKQVQSRKTITR 260


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +2

Query: 326 SRSLDKLKATAEEIEKEYKVATKIIQADFSEDD 424
           S S  + KA A E+E E ++   ++QA     D
Sbjct: 159 SHSRSQEKAVAAELEDEQRLLATVVQAHLDTCD 191


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 414 ARTIRFTRTLRRKLLAW 464
           AR I+  R +RR+LL W
Sbjct: 7   ARCIQERRHIRRELLRW 23


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,104
Number of Sequences: 438
Number of extensions: 4045
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)