Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20c09
         (756 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          23   2.3  
AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase pro...    22   5.4  
AF487333-1|AAL93262.1|   80|Apis mellifera integrin betaPS protein.    22   5.4  
AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    22   7.1  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   7.1  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   9.4  

>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
 Frame = -2

Query: 230 VREHWQVYEHRAQDLVDLAAFAEEKVI--GLHDEREGV----RGVECGSIDSGQSECVRG 69
           +R++ ++  H AQD V +    E   +  G+ +    V    R +E GS DS   +    
Sbjct: 19  MRQNMKLKRHLAQDKVKVRVAEEVDPLPFGVENTISSVPQPPRSLE-GSYDSSSGDSPVS 77

Query: 68  RRASVPRHTGAGGA 27
             +S   HTG GG+
Sbjct: 78  SHSSNGIHTGFGGS 91


>AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase
           protein.
          Length = 85

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 182 DLAAFAEEKVIGLHD 138
           D+A    EK+IGLH+
Sbjct: 12  DMAVLFPEKIIGLHN 26


>AF487333-1|AAL93262.1|   80|Apis mellifera integrin betaPS protein.
          Length = 80

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = +1

Query: 532 PVRSTPKRSARTPCGVCSAAW*HCSTARATCSCTWWATCSRTAPCCG 672
           P  ST  +S + PC  C+A + + +    +   + +A+  R A   G
Sbjct: 7   PYVSTMPKSLKEPCDGCAAPYGYKNIMTLSQDTSHFASLVRNASVSG 53


>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +2

Query: 41  PCAAARWPSSRARTRSDRCQYCHIR 115
           PC   +   S  R   +RCQYC ++
Sbjct: 54  PCTKNQ-QCSILRINRNRCQYCRLK 77


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +2

Query: 41  PCAAARWPSSRARTRSDRCQYCHIR 115
           PC   +   S  R   +RCQYC ++
Sbjct: 103 PCTKNQ-QCSILRINRNRCQYCRLK 126


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -3

Query: 313 PSVRGGSRGEFGDCSSRVMGDIQPMLAPYAN 221
           P ++ G     G  +  V  D  P++APY N
Sbjct: 78  PRIQDGVPLTLGYVTREVSIDGNPLIAPYPN 108


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,264
Number of Sequences: 438
Number of extensions: 3992
Number of successful extensions: 19
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)