Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20c08
         (680 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    51   1e-07
SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    33   0.038
SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosacchar...    28   1.1  
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha...    27   2.5  
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1...    27   3.3  
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po...    27   3.3  
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo...    26   4.4  
SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyc...    26   4.4  
SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi...    26   5.8  
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo...    25   7.7  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    25   7.7  
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ...    25   7.7  
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote...    25   7.7  
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    25   7.7  

>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 51.2 bits (117), Expect = 1e-07
 Identities = 31/117 (26%), Positives = 57/117 (48%), Gaps = 3/117 (2%)
 Frame = +2

Query: 317 IRAAYEDVRSDTTPTEWAVFKFE---GARIVCSARGSDFTEFRTQFSDDERAFGYLRLQM 487
           IR  YE V S      WA+F +E   G  +   A G+D  EF  +F ++   FG+LR++ 
Sbjct: 14  IRNVYEKVLSGADDCSWAIFGYEKGQGNILKVVASGNDNDEFLDEFDENAVLFGFLRVK- 72

Query: 488 GDEMSKRKKFMFMTWVGPNVSVINRAKMSTDKAIIKDIISNFAVELQLENQSEIDID 658
            D  +   KF+ + W G   +   +   S   A + +++  + V++     S++++D
Sbjct: 73  -DVNTGLNKFVLVCWCGE--AAARKGLFSIHMATVSNLLKGYHVQITGRESSDLNMD 126


>SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 230

 Score = 33.1 bits (72), Expect = 0.038
 Identities = 26/93 (27%), Positives = 46/93 (49%)
 Frame = -3

Query: 609 FDMMSLMIALSVDILARLITDTFGPTHVMNINFLRLDISSPICNLRYPNARSSSENCVRN 430
           F ++S+  A+S  ++      TF P+  ++IN+  L    P    R   + SSS + +  
Sbjct: 6   FLLISIFTAISYLVVDGATPRTFAPSASVSINYGTLSTVFPSLYRRASTSSSSSSSSIST 65

Query: 429 SVKSLPLAEHTIRAPSNLNTAHSVGVVSDLTSS 331
           S  S P    +  +PS+ +T+ S G  S +T+S
Sbjct: 66  SHDSQPSTSSS--SPSSTSTSSSSG-TSVITAS 95


>SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 189

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 16/39 (41%), Positives = 24/39 (61%)
 Frame = -3

Query: 612 KFDMMSLMIALSVDILARLITDTFGPTHVMNINFLRLDI 496
           K + +++   +SVDI ARL+T   GP  V+  N  R+DI
Sbjct: 7   KDETLTIPEGVSVDIKARLVT-VKGPRGVLKQNLRRVDI 44


>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
           Upf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +2

Query: 362 EWAVFKFEGARIVCSARGSDFTEFRTQFSDDERAF 466
           EW VF     R    +  +DF +FR+Q  DDE  F
Sbjct: 888 EWNVFAQYKRR---ESNATDFEDFRSQVGDDESKF 919


>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
           Epe1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 948

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 23/93 (24%), Positives = 40/93 (43%)
 Frame = +2

Query: 302 LDRETIRAAYEDVRSDTTPTEWAVFKFEGARIVCSARGSDFTEFRTQFSDDERAFGYLRL 481
           L +ET     E    +T  T +  +  +G R   S   +DF    T  SD E +   L L
Sbjct: 685 LSKETFNFGGEANCENTDTTLFTTWGDQGFRPSDSICYNDFNLLETANSDAEASIHELEL 744

Query: 482 QMGDEMSKRKKFMFMTWVGPNVSVINRAKMSTD 580
           Q  + +++R+  +  T + P+ ++  R     D
Sbjct: 745 QPLNAVNEREVDISQTDMTPSTALDTRVDTRVD 777


>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 594

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -2

Query: 553 HRHVRSYPRHEHKFLAFRHLVSHLQPEVSEC 461
           H  +RS+  +  KFL   HL+ HL    S C
Sbjct: 23  HFWLRSFMSNNRKFLVHIHLIPHLNSLYSIC 53


>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
           component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 536

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 19/66 (28%), Positives = 32/66 (48%)
 Frame = +2

Query: 407 ARGSDFTEFRTQFSDDERAFGYLRLQMGDEMSKRKKFMFMTWVGPNVSVINRAKMSTDKA 586
           +R   F  FR   +D +R   +LRL      SKR K +   W   NVS+++   ++  K 
Sbjct: 212 SRFQTFETFRKPLAD-KRRIEFLRL------SKRMKKLEELWTSENVSMLDALLLNKAKR 264

Query: 587 IIKDII 604
           + + I+
Sbjct: 265 LEQSIV 270


>SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 347

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 295 RHGYFSRSILHNSFVFQTLRHCSHELLR 212
           R  YF+++ LH  FVF  L  CS   L+
Sbjct: 36  RRKYFTKTHLHRLFVFVVLLLCSGYFLK 63


>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
           Tea4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -2

Query: 115 SNRHENNRINHRSFS 71
           SN H NN IN RSF+
Sbjct: 600 SNHHVNNEINRRSFA 614


>SPAC1805.15c |pub2||ubiquitin-protein ligase
           Pub2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 438 RSSLMMNAHSDTSGCRWETR 497
           +S +  +   D SGC WETR
Sbjct: 141 KSQICTDIIDDASGCAWETR 160


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = -2

Query: 523 EHKFLAFRHLVSHLQPEVSECAFIIRELRAELREVATPGR---AHYPGAFKL 377
           EH F+AF+  VS+L  + +E +   +E     R   TP R   AH P  F L
Sbjct: 59  EHLFVAFKCAVSNLAKQWAELSTTDKE--KTRRMFCTPSRLNTAHRPEVFYL 108


>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 905

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = -3

Query: 567 LARLITDTFGPTHVMNINFLRLDISSPICNLRYPNARSSSENCVRNSVKSLPLAEHTI 394
           LAR I D   P ++ N   L LD+ S +   ++   R   E  +++ +K +  +E  I
Sbjct: 222 LARRIIDDDVPANLSNCKLLSLDVGSLVAGSKF---RGEFEERIKSVLKEVEESETPI 276


>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
           kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/37 (27%), Positives = 23/37 (62%)
 Frame = -3

Query: 414 PLAEHTIRAPSNLNTAHSVGVVSDLTSS*AALIVSRS 304
           PLA+  +    + N AH + + +++++S  ++I+ RS
Sbjct: 612 PLAKKPLPVSGHTNNAHPLRLSTEISASQLSMIIERS 648


>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 965

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +2

Query: 395  IVCSARGSDFTEFRTQFSDDERAFGYLRLQMGDEMSKRKKFMFM 526
            ++ S+ G D+ + R   S  + A+G  +    D++SK K+FMF+
Sbjct: 904  VIWSSGGVDY-DLRPHHSVPDTAYGMAK----DKLSKPKRFMFL 942


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,902,114
Number of Sequences: 5004
Number of extensions: 60751
Number of successful extensions: 186
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)