Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20c03
         (789 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak...    28   1.3  
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    27   2.3  
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    27   3.1  
SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyc...    27   3.1  
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo...    27   4.0  
SPAC24B11.09 |||conserved eukaryotic protein|Schizosaccharomyces...    27   4.0  
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    26   7.1  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    26   7.1  

>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 708

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 657 GITKTTQDAASFDYAMAVMKMCNIIHQ 737
           G  + T D   F + +AV+K C+I+H+
Sbjct: 149 GSGRNTTDIVLFPFVLAVIKCCDIVHR 175


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -2

Query: 446 SFSKPRFEKSIFGRLVDVNLTVKNYFDIVSV 354
           SF    F++++    +  N T+ NY+DIV++
Sbjct: 317 SFMSLEFQETLSDNPITANSTILNYYDIVTI 347


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -1

Query: 303 HIFQSNPEHILLNLQLFSLKSVANYPLKVKPLVQ 202
           HIF  + + +   L+L   K+ A+YP    PL +
Sbjct: 782 HIFDGDVQRLTRILELLETKNAASYPKLASPLFE 815


>SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 244

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
 Frame = +3

Query: 549 NSKSVVKKL--RSEVGKTFDVHDYMSCVTVDILLETAMGITKTTQDAASFDYAMAVMKMC 722
           + K V  KL   S V   F +   + CV    + +    +++   +AA F+Y       C
Sbjct: 50  SQKKVPDKLIDASTVKHVFPITKGIGCVMTGSIADARAQVSRARSEAAEFEYKNGYPMPC 109

Query: 723 NIIHQR 740
           +++ +R
Sbjct: 110 DVLAKR 115


>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1055

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 16/64 (25%), Positives = 34/64 (53%)
 Frame = +3

Query: 63  MSSLLNYNFEFDVPPIFHTLLLAIMIMWMLHRWQQSSRLFRLGNKLPGPMALPLVGNSLL 242
           +++LL+++F  D PP   TL+ ++ +++ L        L +LG ++      P++  SL+
Sbjct: 791 INNLLDFDF-MDAPPP-ETLMRSLELLYALGALNNRGELTKLGRQMAEFPTDPMLSKSLI 848

Query: 243 ILGK 254
              K
Sbjct: 849 ASSK 852


>SPAC24B11.09 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 118

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 18/69 (26%), Positives = 30/69 (43%)
 Frame = +3

Query: 324 AGPKLVVFLTDANDVEVILNSQIHIDKSPEYRFFKPWLGEGLLISSGEKWRSHRKMIAPT 503
           AGPK V F   A    ++L+      +SPEY   + +     L ++G  W     ++ P 
Sbjct: 14  AGPKTVHFWAPAMKWTLVLSGIGDYARSPEYLSIRQY---AALCATGAIWTRWSLIVRPK 70

Query: 504 FHINILKSF 530
            + N   +F
Sbjct: 71  NYFNATVNF 79


>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
            Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
 Frame = +3

Query: 156  RWQQSSRLFRLGNKLPGPMALPLVGNS----LLILGKKAEDLVKYALDYSEK 299
            +WQ   R+ R+G K P  +    + NS    ++ L +K   ++   +D  EK
Sbjct: 896  QWQAMDRIHRIGQKRPIKVITLCIENSIESKIIELQEKKAQMIHATIDQDEK 947


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 539 NSHERFQNIYMECRSDHFSM 480
           NS++   N+Y E R DH +M
Sbjct: 787 NSYQSISNLYHELRDDHVNM 806


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,283,080
Number of Sequences: 5004
Number of extensions: 68735
Number of successful extensions: 185
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)