Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20c03
         (789 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...   278   4e-77
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    33   0.004
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    31   0.016
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    27   0.15 
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    24   1.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   4.3  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    23   4.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.7  
AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.          21   9.9  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score =  278 bits (682), Expect = 4e-77
 Identities = 126/231 (54%), Positives = 172/231 (74%)
 Frame = +3

Query: 93  FDVPPIFHTLLLAIMIMWMLHRWQQSSRLFRLGNKLPGPMALPLVGNSLLILGKKAEDLV 272
           F    +F +LL+  +I++ ++       L  L  K+PGP ALPL+GN+L + G   + + 
Sbjct: 9   FSASSVFLSLLIPALILYFIYFRISRRHLLELAEKIPGPPALPLIGNALDLFGSP-DAMF 67

Query: 273 KYALDYSEKYGTVVRAWAGPKLVVFLTDANDVEVILNSQIHIDKSPEYRFFKPWLGEGLL 452
              L  +E +  VV+ W GPKLV+ L D  DVE+IL+S ++IDKS EYRFFKPWLG+GLL
Sbjct: 68  SQVLKKAENFKDVVKIWVGPKLVICLIDPRDVEIILSSNVYIDKSTEYRFFKPWLGDGLL 127

Query: 453 ISSGEKWRSHRKMIAPTFHINILKSFMGVFNENSKSVVKKLRSEVGKTFDVHDYMSCVTV 632
           IS+G+KWR+HRK+IAPTFH+N+LKSF+ +FN N++SVV+K+R E GK FD H+YMS +TV
Sbjct: 128 ISTGQKWRNHRKLIAPTFHLNVLKSFIDLFNANARSVVEKMRKENGKEFDCHNYMSELTV 187

Query: 633 DILLETAMGITKTTQDAASFDYAMAVMKMCNIIHQRHYKVWLHFDAIFKLT 785
           DILLETAMG++K T+D  +F+YAMAVMKMC+I+H RH K+WL  D +F LT
Sbjct: 188 DILLETAMGVSKPTRDHNAFEYAMAVMKMCDILHLRHTKIWLRPDWLFNLT 238


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 32.7 bits (71), Expect = 0.004
 Identities = 34/135 (25%), Positives = 60/135 (44%), Gaps = 14/135 (10%)
 Frame = +3

Query: 180 FRLGNKLPGPMALPLVGNSLLI--LG-KKAEDLVKYALDYSEKYGTVVR---AWAGPKLV 341
           F+  +K+PGP +LP+ G   +   +G  K   +     D +++YG + +    W  P + 
Sbjct: 47  FKTVSKVPGPFSLPIFGTRWIFSCIGYYKLNKIHDAYKDLNQRYGALCKEEALWNFPMIS 106

Query: 342 VFLTDANDVEVIL--NSQIHIDKSPE----YRFFK--PWLGEGLLISSGEKWRSHRKMIA 497
           VF     D+E I+  NS+  +    E    YR  +   +   GL+   G+ W  H   +A
Sbjct: 107 VF--SRQDIETIIRRNSRYPLRPPQEVISHYRRTRRDRYTNLGLVNEQGQTW--HDLRVA 162

Query: 498 PTFHINILKSFMGVF 542
            T  +    + +G F
Sbjct: 163 LTSELTAASTVLGFF 177


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 30.7 bits (66), Expect = 0.016
 Identities = 46/190 (24%), Positives = 79/190 (41%), Gaps = 9/190 (4%)
 Frame = +3

Query: 120 LLLAIMIMWM-LHRWQQSSRLFRLGNKLPGPMALPLVGNSL-LILGKKAEDLVKYALDYS 293
           +L  I ++++ L+ +  S+  F     + GP  +P  G +  LIL KK+     +  D  
Sbjct: 7   ILCGIAVLFLALYYYLTSTFDFWKSRGVVGPKPVPFFGTTKDLILVKKST--AHFVKDIY 64

Query: 294 EKYGT--VVRAWAGPKLVVFLTDANDVEVILNSQIHIDKSPEYRFFKPW--LGEGLLISS 461
           EKY    +V  +A     + L D   ++ IL        +     F+    L   LL   
Sbjct: 65  EKYKNEPMVGLYATRSPFLLLNDPELIKDILIRDFSKFANRGLGVFERTEPLSPHLLNLE 124

Query: 462 GEKWRSHRKMIAPTFHINILKSFMGVFNE---NSKSVVKKLRSEVGKTFDVHDYMSCVTV 632
            E+WR  R  ++P F    LK    +  E   N ++ + KL  E  +  +  +  +  T 
Sbjct: 125 VERWRPLRSRLSPIFTSGKLKEMFYLIIECSLNLETYLDKL-IEKNEPIECRELTARFTT 183

Query: 633 DILLETAMGI 662
           D++   A GI
Sbjct: 184 DVIGSCAFGI 193


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 27.5 bits (58), Expect = 0.15
 Identities = 10/40 (25%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = -2

Query: 131 CKQQGVEYWWNIKLKIVIKQ*RHVAKKSS-ACTQTLNMLK 15
           C+ +  ++WWN+K+  +    + + K+++  C + ++MLK
Sbjct: 359 CQNEMNKWWWNMKISNLSFDKQSLLKENTVTCQEAMHMLK 398


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 17/77 (22%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
 Frame = +3

Query: 510 INILKSFMGVFNENSKSVVKKLRSEVGKTFDVHDYMSCVTVDILLETAMGITKTTQDAAS 689
           I+ L  F   + + S+  +K++ ++  +  D+ DY      +I + T   I + ++    
Sbjct: 339 IHRLVYFQNEYEQPSEEDLKRITNQPSEGEDISDYKFRHITEITILTVQLIVEFSKRLPG 398

Query: 690 FDYAM-----AVMKMCN 725
           FD  M     A++K C+
Sbjct: 399 FDELMREDQIALLKACS 415


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +3

Query: 498 PTFHINILKSFMG 536
           PT+ +NILKS +G
Sbjct: 126 PTWEVNILKSIVG 138


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -3

Query: 670 VFVIPIAVSSRISTVTQL 617
           +F++P+ VSS IS + QL
Sbjct: 109 MFILPLIVSSLISGMAQL 126


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 405 SPEYRFFKPWLGEGLLISSGEKWR 476
           +PEYR++     E +L+ SG + R
Sbjct: 266 TPEYRWYAQTGSEPMLVLSGPRTR 289


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 405 SPEYRFFKPWLGEGLLISSGEKWR 476
           +PEYR++     E +L+ SG + R
Sbjct: 266 TPEYRWYAQTGSEPMLVLSGPRTR 289


>AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.
          Length = 88

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 6/21 (28%), Positives = 13/21 (61%)
 Frame = +3

Query: 714 KMCNIIHQRHYKVWLHFDAIF 776
           K+C ++ ++  + W+H D  F
Sbjct: 55  KVCIVVRRKLEENWIHVDISF 75


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,224
Number of Sequences: 438
Number of extensions: 4728
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)