Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt20b23
(409 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0796 + 31800256-31800528,31800635-31800758,31802642-318027... 29 1.4
07_03_0230 + 15526504-15526673,15526809-15526867,15527135-155271... 28 2.5
12_01_0977 - 9900073-9900521,9900594-9900698,9900770-9900959,990... 28 3.3
07_01_1107 + 10205351-10207519 28 3.3
04_01_0252 - 3329712-3331061 28 3.3
11_01_0059 - 444991-446908,447595-448218,448431-448861,450974-45... 27 4.3
11_06_0674 + 26131964-26131976,26132161-26132631,26133565-26133695 27 5.7
03_02_0631 + 9969841-9969868,9969965-9970082,9970186-9970828,997... 27 5.7
12_02_0778 + 23074463-23076411,23076859-23077072,23077824-230778... 27 7.6
>02_05_0796 +
31800256-31800528,31800635-31800758,31802642-31802771,
31804336-31804414,31804848-31805133,31805273-31805385
Length = 334
Score = 29.1 bits (62), Expect = 1.4
Identities = 8/22 (36%), Positives = 16/22 (72%)
Frame = +3
Query: 180 NLSKLGPPKPTPTTSEAPKDKM 245
N++ +GPP+P+P+ AP+ +
Sbjct: 119 NIASMGPPRPSPSRGRAPRGSL 140
>07_03_0230 +
15526504-15526673,15526809-15526867,15527135-15527139,
15528165-15528268,15528362-15528437,15528646-15528704,
15528803-15528868,15529372-15529455,15529608-15529672,
15529758-15529840,15529949-15530039,15530142-15530194,
15530285-15530428,15530562-15530675
Length = 390
Score = 28.3 bits (60), Expect = 2.5
Identities = 15/49 (30%), Positives = 20/49 (40%)
Frame = -2
Query: 213 VWVWVGQAWKGWPPLSQISQSWAPMIGALPSVHRVGLWHRENFVPGRWN 67
V W GQ W I+ SWA M+ + S + + PG WN
Sbjct: 185 VATWGGQYGNSWRTTGDINDSWASMLSNIDSNDASASYAK----PGGWN 229
>12_01_0977 -
9900073-9900521,9900594-9900698,9900770-9900959,
9901035-9901093,9901297-9901688,9901770-9902059,
9902146-9903030
Length = 789
Score = 27.9 bits (59), Expect = 3.3
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Frame = +3
Query: 105 VQPDGQKAEPQSSGPNFVKFATKVANLSKLGPPKPT----PTTSEAPKDK 242
+ P G++ +P ++ PN K A A +PT PT ++A DK
Sbjct: 397 IDPTGKEPDPAATEPNLSKDAEPTAESQPTAESQPTAESQPTGAQASDDK 446
>07_01_1107 + 10205351-10207519
Length = 722
Score = 27.9 bits (59), Expect = 3.3
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +2
Query: 44 LPTRVAAEFHLPGTKFSRCHSPTRWTEGRAPIIGAQLCEICDKGGQ 181
LP V A FHL K + C S T+ +G ++ + EI Q
Sbjct: 647 LPESVGALFHLQTIKLNHCSSLTQLPQGIKLLLNLRCLEIAHSNVQ 692
>04_01_0252 - 3329712-3331061
Length = 449
Score = 27.9 bits (59), Expect = 3.3
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +3
Query: 111 PDGQKAEPQSSGPNFVKFATKVANLSK-LGPPKPTPTTSEAPK 236
P +E S+G + + T AN+SK PP PTP+ ++ P+
Sbjct: 344 PSNFDSEKDSNGDS--NYGTTDANVSKDFQPPTPTPSQNDRPQ 384
>11_01_0059 -
444991-446908,447595-448218,448431-448861,450974-452293
Length = 1430
Score = 27.5 bits (58), Expect = 4.3
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -1
Query: 151 LGPDDWGSAFCPSGWTVASRELCSGEMELGCDPGW 47
LG D++G CP+ + S+ C+G + +P W
Sbjct: 153 LGKDNYGELACPNAFDSVSQHKCTGHAVV--EPEW 185
>11_06_0674 + 26131964-26131976,26132161-26132631,26133565-26133695
Length = 204
Score = 27.1 bits (57), Expect = 5.7
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = -2
Query: 183 GWPPLSQISQSWAPMIGALPSVHRVGLWHRENFVPG 76
GW P++ + S + + + H G W++E ++PG
Sbjct: 164 GWVPMASVGTSTGFVEMSSRNEHGKGFWNQEPWMPG 199
>03_02_0631 +
9969841-9969868,9969965-9970082,9970186-9970828,
9971146-9971935,9972002-9972051,9972618-9972704
Length = 571
Score = 27.1 bits (57), Expect = 5.7
Identities = 17/48 (35%), Positives = 21/48 (43%)
Frame = +3
Query: 99 ATVQPDGQKAEPQSSGPNFVKFATKVANLSKLGPPKPTPTTSEAPKDK 242
A V P P+ S PN K ATK + L+ P K P PK +
Sbjct: 111 AKVSPPPAAKPPKLSPPNLAK-ATKPSRLAAKPPKKAAPGPELDPKPR 157
>12_02_0778 +
23074463-23076411,23076859-23077072,23077824-23077887,
23077930-23078008,23078181-23078303,23078805-23078919
Length = 847
Score = 26.6 bits (56), Expect = 7.6
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Frame = -1
Query: 238 SFGASDVVGVGLGGPSLERLATFVANFTKLGPDD---WGSAFCPS-GWTVASRELCSGEM 71
++GA D G GGP V ++ PDD G+A S G VA + C
Sbjct: 118 AWGAQDRGGGARGGPFSAAAGRCVEKLLRVAPDDRRALGAALASSRGELVAPDDYCHVLR 177
Query: 70 ELG 62
ELG
Sbjct: 178 ELG 180
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,743,697
Number of Sequences: 37544
Number of extensions: 267249
Number of successful extensions: 1038
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 995
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1035
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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