Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt20b17
(314 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0257 + 21746643-21748091 33 0.062
01_01_0357 - 2816650-2817897 29 0.77
08_01_0233 + 1876940-1877509,1907940-1908195,1908290-1908589,190... 27 2.3
02_03_0103 + 15244812-15245180,15245258-15245851 27 2.3
09_02_0311 + 7164774-7166327 27 3.1
02_02_0544 + 11367660-11368061,11368139-11368478,11369444-113695... 27 3.1
01_06_1259 - 35810926-35811777 27 3.1
08_02_0113 - 12715888-12716181,12717443-12717602,12718327-127183... 27 4.1
08_01_0781 + 7570485-7570796,7570808-7570885,7570963-7571562 27 4.1
03_02_0155 - 5974118-5974173,5974242-5974314,5974393-5974500,597... 27 4.1
03_03_0070 - 14256143-14257492 26 5.4
10_08_0151 - 15229235-15229243,15230032-15230103,15230369-152304... 26 7.1
04_04_0318 + 24347364-24348826,24348920-24349048,24349158-243492... 26 7.1
>11_06_0257 + 21746643-21748091
Length = 482
Score = 32.7 bits (71), Expect = 0.062
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1
Query: 202 YLVKEEDSDMILDVASPSPSRKRRLDHLTWEEKMQKK 312
Y+V+++DS LD+ PSP ++ D TW + +
Sbjct: 258 YVVRDDDSVHALDLTGPSPVARKVFDERTWSTSLPSR 294
>01_01_0357 - 2816650-2817897
Length = 415
Score = 29.1 bits (62), Expect = 0.77
Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = -1
Query: 305 CIFSSHVR-WSSRRFLDGDGDATS 237
C+F HVR W +R DGDGD +
Sbjct: 289 CVFIMHVRVWKQQRRGDGDGDGAA 312
>08_01_0233 +
1876940-1877509,1907940-1908195,1908290-1908589,
1908777-1908939,1908958-1908994,1910122-1910742
Length = 648
Score = 27.5 bits (58), Expect = 2.3
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Frame = +1
Query: 211 KEEDSDMILDVAS---PSPSRKR-RLDHLTWEEKMQK 309
KE++ + +++ S P P RK + LTWEEK+ K
Sbjct: 301 KEKEKEKVVETKSELKPKPRRKNWEEEELTWEEKVLK 337
>02_03_0103 + 15244812-15245180,15245258-15245851
Length = 320
Score = 27.5 bits (58), Expect = 2.3
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 207 GEGGRFGYDSRCSVTVSVQETATGPSDMGRKNAKKK 314
GE G D+R S T + + + MGRK AK+K
Sbjct: 178 GEEDEEGDDARKSTTPDLSQPSAKKRPMGRKEAKEK 213
>09_02_0311 + 7164774-7166327
Length = 517
Score = 27.1 bits (57), Expect = 3.1
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -1
Query: 302 IFSSHVRWSSRRFLDGDGDATSR 234
++S H W +RF+DGDGD R
Sbjct: 488 VWSDHWYW--KRFVDGDGDGARR 508
>02_02_0544 +
11367660-11368061,11368139-11368478,11369444-11369571,
11371249-11371404
Length = 341
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3
Query: 198 QLLGEGGRFGYDSRCSVTVSVQETATGPSDMGRKNAKKK 314
++ GE G D+R S T + + + +GRK AK+K
Sbjct: 186 EIAGEEDEEGDDARKSTTPDLSQPSAKKRPIGRKQAKEK 224
>01_06_1259 - 35810926-35811777
Length = 283
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +1
Query: 142 IEWSDYEKMSAPIIITVPNNYLVKEEDS-DMILDVASPSPSRKRRLDHLT 288
+EW + E++ P+ IT+P L+ ++ + V P R R++ +T
Sbjct: 100 LEWKEVEEIMLPLDITIPLKTLISDKFALQNTAPVFKPKVGRPRKVYAIT 149
>08_02_0113 -
12715888-12716181,12717443-12717602,12718327-12718368,
12718443-12718465,12718616-12720653,12720736-12720965,
12722207-12722329,12722438-12723010,12724684-12724733,
12726828-12726923,12726987-12727394,12727609-12727795
Length = 1407
Score = 26.6 bits (56), Expect = 4.1
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 207 GEGGRFGYDSRCSVTVSVQETATGPSDMGRKNAKKK 314
GE G D+R S T + + + MGRK AK+K
Sbjct: 117 GEEDEEGDDARKSTTPDLLQPSAKKRPMGRKQAKEK 152
>08_01_0781 + 7570485-7570796,7570808-7570885,7570963-7571562
Length = 329
Score = 26.6 bits (56), Expect = 4.1
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 207 GEGGRFGYDSRCSVTVSVQETATGPSDMGRKNAKKK 314
GE G D+R S T + + + MGRK AK+K
Sbjct: 185 GEEDEEGDDARKSTTPDLLQPSAKKRPMGRKQAKEK 220
>03_02_0155 -
5974118-5974173,5974242-5974314,5974393-5974500,
5975189-5976914,5977065-5977620,5978008-5978485
Length = 998
Score = 26.6 bits (56), Expect = 4.1
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 199 NYLVKEEDSDMILDVASPSPSRK 267
N L+ +DSDM +D SPSR+
Sbjct: 146 NQLIVSDDSDMDMDADEDSPSRE 168
>03_03_0070 - 14256143-14257492
Length = 449
Score = 26.2 bits (55), Expect = 5.4
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -1
Query: 278 SSRRFLDGDGDATSRIISESSSFTK*LLGT 189
S R DGDGD + +S SSSF G+
Sbjct: 90 SIRPLGDGDGDRSGAAVSSSSSFASVRFGS 119
>10_08_0151 -
15229235-15229243,15230032-15230103,15230369-15230459,
15230553-15230695,15231910-15232022,15232171-15232315
Length = 190
Score = 25.8 bits (54), Expect = 7.1
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -3
Query: 117 YHAISNFL*TPTNRALLSDMPFCVNNKRL 31
YH NF P +L D+PF +NK +
Sbjct: 69 YHTDFNFTFAPIYTLILHDLPFHSHNKNI 97
>04_04_0318 +
24347364-24348826,24348920-24349048,24349158-24349293,
24349447-24349535,24349631-24349742,24349836-24349942,
24350033-24350129
Length = 710
Score = 25.8 bits (54), Expect = 7.1
Identities = 9/38 (23%), Positives = 18/38 (47%)
Frame = +1
Query: 196 NNYLVKEEDSDMILDVASPSPSRKRRLDHLTWEEKMQK 309
N D + ++ ++ SPS+KR+ + W+ K
Sbjct: 113 NGVSSSSRDGESVVAASASSPSKKRKFSPIIWDRDSPK 150
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,805,116
Number of Sequences: 37544
Number of extensions: 129655
Number of successful extensions: 316
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 316
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 386885760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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