Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20b13
         (527 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    27   0.16 
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    25   0.63 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   1.9  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   3.4  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   4.5  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   7.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.8  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 26.6 bits (56), Expect = 0.16
 Identities = 15/73 (20%), Positives = 24/73 (32%)
 Frame = +2

Query: 194 SLRQEGKREGDDHTDPAQDPQSPTEEAARGSGIYGLDLQSARGKEEQCQNDPQVCFGSAP 373
           S   E  RE    T    + +  +E   +G   Y     +  G  +   +  Q C G   
Sbjct: 757 STSSEESREEKATTSLEAEKREKSEHCEKGKEYYAASFHTDIGNSQSLAHQDQCCPGFTM 816

Query: 374 FRRAHGHHGSVGC 412
            +     H + GC
Sbjct: 817 TKSGKTRHQNTGC 829


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 24.6 bits (51), Expect = 0.63
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = +3

Query: 327 KSNVKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL--TGIQDFRYGG 470
           K   K  L + S  ++   +  IMG    GK+TLL+ L  T I    +GG
Sbjct: 128 KDITKRPLPNESQLIKRHPIVTIMGHVDHGKTTLLDALRNTSIAKSEFGG 177


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = +3

Query: 348 LKSVSGRLRSGELTAIMGPSGA---GKSTLLNILTGIQDFRY 464
           L ++S  + S + T  +G  G    GKST++  ++G+Q  R+
Sbjct: 29  LTALSREVISRQATINIGTIGHVAHGKSTIVKAISGVQTVRF 70


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +3

Query: 228 ITPTQHKTLSHLPKRQPVDLAFTDLTYKVQEGRKSNVKTILKSV 359
           +TP     +S +P   P+DLA       +   RK   K IL+S+
Sbjct: 435 LTPPSSNPVSPVPSPDPLDLAIPVRETLILPPRK-RCKMILESM 477


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +2

Query: 407 GCREVDASQHTHRDTRLPVWR 469
           G   V+ ++  H D RL  WR
Sbjct: 264 GSNMVEGNESDHNDGRLRYWR 284


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -3

Query: 522 QLPETGQVTLHTVDCYTTLHTGSLVSL 442
           +LP+   V  +T DC     TG+   L
Sbjct: 208 ELPQLQLVKNYTADCTQVYSTGNFTCL 234


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -2

Query: 88  DFNMDCDNDASYTRRGRACTEL 23
           DFN + + +AS + +GRA  ++
Sbjct: 863 DFNPNIEEEASDSAQGRAILKI 884


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,689
Number of Sequences: 438
Number of extensions: 3052
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14845611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)